Factsheet for AT3G19210.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99258	Canola	nucleus	89.45	89.75
Bra022395.1-P	Field mustard	nucleus	89.78	89.49
CDX92308	Canola	nucleus	89.56	89.46
KRH77966	Soybean	nucleus	67.25	68.0
HORVU1Hr1G071540.2	Barley	nucleus	19.56	65.2
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	26.37	65.04
HORVU7Hr1G119270.3	Barley	nucleus	20.0	65.0
Solyc04g056410.2.1	Tomato	nucleus	41.87	64.91
GSMUA_Achr5P24600_001	Banana	nucleus	65.49	63.81
VIT_03s0063g00580.t01	Wine grape	nucleus	67.58	62.88
EES07568	Sorghum	nucleus	65.16	61.13
Zm00001d018151_P003	Maize	nucleus	64.73	60.85
Os02t0762800-00	Rice	nucleus	65.49	60.82
HORVU6Hr1G078680.2	Barley	nucleus	65.27	60.8
TraesCS6A01G321200.1	Wheat	nucleus	64.84	60.64
TraesCS6B01G351900.1	Wheat	nucleus	64.18	58.23
TraesCS6D01G300900.1	Wheat	cytosol	64.4	55.34
AT1G03750.1	Thale cress	plastid	21.32	22.51
AT5G63950.1	Thale cress	cytosol	19.67	16.42
AT3G32330.1	Thale cress	cytosol	5.82	16.21
AT2G18760.3	Thale cress	nucleus	20.22	14.77
AT2G21450.2	Thale cress	nucleus	12.97	14.34
AT1G08600.3	Thale cress	nucleus	21.98	13.52
AT2G16390.2	Thale cress	nucleus	13.19	13.47
AT3G24340.1	Thale cress	nucleus	12.86	10.34
AT3G42670.4	Thale cress	nucleus	13.63	9.86
AT5G20420.1	Thale cress	cytosol	13.3	9.6
AT1G05490.1	Thale cress	mitochondrion, nucleus	14.4	9.29
AT3G54280.2	Thale cress	mitochondrion	20.0	8.55
AT3G31900.1	Thale cress	cytosol	3.41	7.89
AT3G32280.1	Thale cress	endoplasmic reticulum, plasma membrane	3.74	7.17

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:821455	UniProt:A0A178VKI0
EMBL:AB250666	ProteinID:AEE76208.1	ProteinID:AEE76209.1	ArrayExpress:AT3G19210	EnsemblPlantsGene:AT3G19210	RefSeq:AT3G19210
TAIR:AT3G19210	RefSeq:AT3G19210-TAIR-G	EnsemblPlants:AT3G19210.1	TAIR:AT3G19210.1	Symbol:ATRAD54	Unigene:At.53386
ProteinID:BAB02963.1	EMBL:DQ912973	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016032	GO:GO:0016787	GO:GO:0045003
GO:GO:0051301	GO:GO:0051701	GO:GO:0071248	GO:GO:0071480	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	RefSeq:NP_001189933.1	RefSeq:NP_188552.3	ProteinID:OAP06366.1
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PO:PO:0000005	PO:PO:0000293	PO:PO:0005660
PO:PO:0009005	PO:PO:0009074	PO:PO:0020038	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF889	UniProt:Q0PCS3	Symbol:RAD54	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0000DC2446	SEG:seg	:	:

Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]

Coordinates

chr3:-:6652695..6658963

Molecular Weight (calculated)

101863.0 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.483

Length

910 amino acids

Sequence
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.