Factsheet for Os02t0762800-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0615800-01
Os12t0497300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	Os11t0615800-01	AT5G20850.1	17227544
AT3G19210.1	Os12t0497300-01	AT5G20850.1	17227544
AT3G19210.1	Os11t0615800-01	AT5G20850.1	18430956
AT3G19210.1	Os12t0497300-01	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07568	Sorghum	nucleus	83.47	84.33
TraesCS6A01G321200.1	Wheat	nucleus	82.55	83.14
Zm00001d018151_P003	Maize	nucleus	81.63	82.64
HORVU6Hr1G078680.2	Barley	nucleus	81.94	82.19
TraesCS6B01G351900.1	Wheat	nucleus	82.04	80.16
HORVU1Hr1G071540.2	Barley	nucleus	21.43	76.92
HORVU7Hr1G119270.3	Barley	nucleus	21.84	76.43
TraesCS6D01G300900.1	Wheat	cytosol	82.45	76.3
GSMUA_Achr5P24600_001	Banana	nucleus	65.41	68.63
KRH77966	Soybean	nucleus	60.92	66.33
AT3G19210.1	Thale cress	nucleus	60.82	65.49
CDX92308	Canola	nucleus	60.51	65.09
Bra022395.1-P	Field mustard	nucleus	60.51	64.95
CDX99258	Canola	nucleus	59.9	64.72
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	23.98	63.69
Solyc04g056410.2.1	Tomato	nucleus	36.94	61.67
VIT_03s0063g00580.t01	Wine grape	nucleus	60.0	60.12
Os05t0247900-01	Rice	plastid	18.37	21.03
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	9.69	20.26
Os05t0392400-01	Rice	cytosol, nucleus	8.88	19.33
Os01t0102800-01	Rice	cytosol, nucleus, plastid	17.96	19.19
Os04t0692750-01	Rice	cytosol	18.16	18.03
Os07t0692600-01	Rice	mitochondrion	8.67	17.89
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	11.63	16.96
Os08t0243866-00	Rice	endoplasmic reticulum	10.71	16.25
Os10t0457700-01	Rice	nucleus	20.41	15.16
Os02t0650800-00	Rice	cytosol	12.86	13.45
Os06t0255700-01	Rice	cytosol	12.04	12.47
Os02t0762600-01	Rice	cytosol	1.84	11.76
Os03t0165266-00	Rice	nucleus	11.73	10.71
Os08t0289400-00	Rice	cytosol, nucleus	5.0	9.28
Os02t0161200-01	Rice	nucleus	3.27	7.51
Os07t0692500-01	Rice	cytosol	0.92	1.58
Os02t0161300-01	Rice	extracellular	0.71	1.37
Os07t0692401-00	Rice	mitochondrion	0.51	1.03
Os04t0692700-01	Rice	nucleus	0.61	0.76

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4330819	UniProt:A4PBL4
EMBL:AB240577	ProteinID:BAD17217.1	ProteinID:BAF10121.2	ProteinID:BAS81046.1	ProteinID:EEE57852.1	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0016787
GO:GO:0045003	GO:GO:0051301	GO:GO:0051701	GO:GO:0071248	GO:GO:0071480	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlantsGene:Os02g0762800	EnsemblPlants:Os02t0762800-00
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF889	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI00013349FE	RefSeq:XP_015623131.1	RefSeq:XP_015623132.1	RefSeq:XP_015623133.1	RefSeq:XP_015623134.1	RefSeq:XP_015623135.1
SEG:seg	:	:	:	:	:

Description

DNA REPAIR PROTEIN RAD54Similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase. (Os02t0762800-00)

Coordinates

chr2:-:32125904..32134832

Molecular Weight (calculated)

108308.0 Da

IEP (calculated)

6.555

GRAVY (calculated)

-0.472

Length

980 amino acids

Sequence
(BLAST)

001: MPSTSKCNRI SRVADEEEEE EIVAVSSDAD ESESESEVGS GAEEEDDDYV GESSDSAGGS GSGSGDGDGD EEGGRSDIGD GEGEGGGRRV RSACRGVRAN
101: DRERKSQNVD ALVRGNLVVR RQPLIPRILS VSDAAAIARK PFKPPCQNGY SENNEQLARR LSARKRFVPW GSVQPFAVTN ILPQSPAVSS DDSVENEESL
201: PPGIEPLILW QPEGRDKENS NFSAIKVDHL LVRYLRPHQR EGVQFMFDCV SGLLNDDGIS GCILADDMGL GKTLQSITLL YTLLCQGFDA KPMVKRAVVV
301: TPTSLVSNWE SEIIKWLKGR VQLLALCEST RADVLSGIES FLKPLSRLQV LIVSYETFRM HSSKFERPGS CDLLICDEAH RLKNDQTLTN KALAALPCKR
401: RILLSGTPMQ NDLEEFFSMV NFTNPGVLGD ATYFRRYYEA PIICGREPTA SAEEKNLGSE RSAELSAKVN LFILRRTNAL LSNHLPPKIV EVVCCKLTAL
501: QTALYNHFIH SKNVKRLISE GTKQSKVLAY ITALKKLCNH PKLIYDTIKS NNSGGSGFDD CLRFFPPELF SGRSGSWTGG GGMWVELSGK MHVLARLLGH
601: LRLKTDDRIV LVSNYTQTLD LFAQLCRERR YPYIRLDGAT SINKRQKLVN QFNDPSRDEF VFLLSSKAGG CGLNLVGGNR LILFDPDWNP ANDKQAAARV
701: WRDGQKKRVY IYRFLSTGTI EEKVYQRQMS KEGLQKVIQQ EQADGKMQGS SLSTEDLRDL FTFHEQIRSE IHENLKCNRC NKDGCMVLDG SKFDSAATEH
801: EASNSGENSY IDIGGFGAIS GCVQKMNSSN QQIGSPSEED LGSWGHHSDP STVPDTILQC SSGDEVSFVF TNQIDGKLVP VESMARAATH RTHEVTVNAE
901: KEVGKINSSN VPGTERQSLL GKNLKMMGFN LKNSSMKFPT KSRRMLPNCL QGMNKTSTSS DHQQTKKLHV ISDASDDDFV

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.