Factsheet for Os12t0497300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0164800-01
Os01t0164900-01
Os02t0762800-00
Os09t0280600-01
Os11t0146800-01
Os11t0615800-01
Os12t0143800-01
Os12t0497300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	Os02t0762800-00	AT3G19210.1	17227544
AT5G20850.1	Os02t0762800-00	AT3G19210.1	18430956
AT5G20850.1	Os11t0146800-01	AT3G22880.1	15014444
AT5G20850.1	Os12t0143800-01	AT3G22880.1	15014444
AT5G20850.1	Os11t0146800-01	AT3G22880.1	16415210
AT5G20850.1	Os12t0143800-01	AT3G22880.1	16415210
AT5G20850.1	Os09t0280600-01	AT4G29170.1	17937504
AT5G20850.1	Os01t0164800-01	AT5G01630.1	15014444
AT5G20850.1	Os01t0164900-01	AT5G01630.1	15014444
AT5G20850.1	Os01t0164800-01	AT5G01630.1	16415210
AT5G20850.1	Os01t0164900-01	AT5G01630.1	16415210
AT5G20850.1	Os11t0615800-01	AT5G20850.1	15014444
AT5G20850.1	Os12t0497300-01	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G381300.1	Wheat	cytosol	94.13	93.86
Zm00001d041757_P001	Maize	cytosol	93.26	93.53
TraesCS7B01G287700.1	Wheat	cytosol	93.55	93.0
TraesCS7A01G384800.1	Wheat	cytosol	93.55	93.0
Os11t0615800-01	Rice	cytosol	91.2	91.74
OQU79150	Sorghum	cytosol	92.96	90.06
VIT_11s0016g00340.t01	Wine grape	cytosol	88.86	89.91
Solyc07g017540.2.1	Tomato	cytosol	89.15	88.89
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	93.26	86.18
Bra006580.1-P	Field mustard	cytosol	85.63	85.38
KRH02540	Soybean	cytosol	85.63	85.13
AT5G20850.1	Thale cress	cytosol	85.34	85.09
KRH19405	Soybean	cytosol	85.63	84.88
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	27.86	84.82
Bra002334.1-P	Field mustard	cytosol	85.04	84.8
CDX92430	Canola	cytosol	78.89	84.33
CDX88837	Canola	cytosol	79.77	83.95
CDX70947	Canola	cytosol	79.77	83.95
CDY16571	Canola	cytosol	78.3	83.7
Os12t0143800-01	Rice	mitochondrion	51.32	50.87
Os11t0146800-01	Rice	nucleus	51.03	50.58
Os02t0562100-00	Rice	plastid	23.17	27.24
Os01t0578000-01	Rice	cytosol	26.98	26.36
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	23.75	22.31

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	EntrezGene:4352257	InterPro:AAA+_ATPase	EMBL:AB080264
ProteinID:ABA98592.2	ProteinID:BAB85492.1	ProteinID:BAF29825.1	ProteinID:BAT17228.1	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000724	GO:GO:0000730	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006312	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787
GO:GO:0042148	GO:GO:0070192	GO:GO:1990426	InterPro:IPR020587	InterPro:IPR020588	EnsemblPlantsGene:Os12g0497300
EnsemblPlants:Os12t0497300-01	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	UniProt:Q8RV34	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI00000A0339	RefSeq:XP_015619428.1
SEG:seg	:	:	:	:	:

Description

DNA REPAIR PROTEIN RAD51A2DNA repair protein RAD51, Homologous pairing, DNA double strand break (DSB) repair and homologous recombination (Os12t0497300-01)

Coordinates

chr12:+:18876115..18879035

Molecular Weight (calculated)

36399.7 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.015

Length

341 amino acids

Sequence
(BLAST)

001: MSSSGAAAAA AATAEEAAAG GEHGPFPIEQ LQASGIAALD VKKLKDAGLC TVESVVYSPR KDLLQIKGIS EAKVDKIIEG ASKLVPLGFT SASQLHAQRL
101: EIIQVTTGSR ELDKILDGGI ETGSITEIYG EFRSGKTQLC HTLCVTCQLP LDQGGGEGKA LYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETRFA IMIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGAA MFGPQIKPIG GNIMAHASTT
301: RLFLRKGRAE ERICKVVSSP CLAEAEARFQ ISPEGVTDVK D

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.