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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG91377
KRG95451
KRH02540
KRH17731
KRH19405
KRH31957
KRH35438
KRH67127
KRH71497
KRH74183
KRH77966

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G20850.1 KRH77966 AT3G19210.1 17227544
AT5G20850.1 KRH77966 AT3G19210.1 18430956
AT5G20850.1 KRG91377 AT3G22880.1 15014444
AT5G20850.1 KRH35438 AT3G22880.1 15014444
AT5G20850.1 KRG91377 AT3G22880.1 16415210
AT5G20850.1 KRH35438 AT3G22880.1 16415210
AT5G20850.1 KRG95451 AT3G29350.1 17937504
AT5G20850.1 KRH31957 AT3G29350.1 17937504
AT5G20850.1 KRH67127 AT3G29350.1 17937504
AT5G20850.1 KRH71497 AT3G29350.1 17937504
AT5G20850.1 KRH74183 AT4G29170.1 17937504
AT5G20850.1 KRH17731 AT5G01630.1 15014444
AT5G20850.1 KRH17731 AT5G01630.1 16415210
AT5G20850.1 KRH02540 AT5G20850.1 15014444
AT5G20850.1 KRH19405 AT5G20850.1 15014444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH19405 Soybean cytosol 97.96 97.67
VIT_11s0016g00340.t01 Wine grape cytosol 88.63 90.21
Solyc07g017540.2.1 Tomato cytosol 88.63 88.89
Bra002334.1-P Field mustard cytosol 88.05 88.3
Bra006580.1-P Field mustard cytosol 88.05 88.3
AT5G20850.1 Thale cress cytosol 87.46 87.72
Os11t0615800-01 Rice cytosol 86.59 87.61
CDX92430 Canola cytosol 81.34 87.46
GSMUA_Achr8P16810_001 Banana cytosol 84.26 87.05
CDY16571 Canola cytosol 80.76 86.83
CDX70947 Canola cytosol 81.63 86.42
CDX88837 Canola cytosol 81.63 86.42
TraesCS7D01G381300.1 Wheat cytosol 86.01 86.26
EER99597 Sorghum cytosol 86.01 85.76
TraesCS7A01G384800.1 Wheat cytosol 85.71 85.71
Os12t0497300-01 Rice cytosol 85.13 85.63
TraesCS7B01G287700.1 Wheat cytosol 85.42 85.42
OQU83843 Sorghum cytosol 86.59 85.1
OQU79150 Sorghum cytosol 85.71 83.52
GSMUA_Achr10P... Banana cytosol, mitochondrion, nucleus, plastid 26.82 82.14
HORVU7Hr1G091450.2 Barley cytosol, nucleus 84.55 78.59
Zm00001d006656_P001 Maize cytosol 24.49 69.42
KRH35438 Soybean nucleus 51.6 51.3
GSMUA_Achr10P... Banana cytosol, mitochondrion, nucleus 23.03 44.13
KRG91377 Soybean cytosol 17.78 42.07
KRH65320 Soybean mitochondrion, nucleus 27.99 27.67
KRH01614 Soybean nucleus 22.16 26.39
KRH10360 Soybean mitochondrion, nucleus, plastid 23.62 21.43
Protein Annotations
Gene3D:1.10.150.20EntrezGene:100820307MapMan:14.3.2.4Gene3D:3.40.50.300InterPro:AAA+_ATPaseEMBL:ACUP02010309
InterPro:DNA_recomb/repair_Rad51InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeInterPro:DNA_repair_Rad51/TF_NusA_a-hlxEnsemblPlantsGene:GLYMA_17G045000GO:GO:0000003
GO:GO:0000150GO:GO:0000166GO:GO:0000400GO:GO:0000724GO:GO:0000730GO:GO:0000794
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003690GO:GO:0003697GO:GO:0003824
GO:GO:0004518GO:GO:0004520GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0006139GO:GO:0006259GO:GO:0006281
GO:GO:0006310GO:GO:0006312GO:GO:0006950GO:GO:0006974GO:GO:0007049GO:GO:0007131
GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009628GO:GO:0009987
GO:GO:0010212GO:GO:0016043GO:GO:0016787GO:GO:0042148GO:GO:0070192GO:GO:1990426
UniProt:I1MS33InterPro:IPR020587InterPro:IPR020588EnsemblPlants:KRH02540ProteinID:KRH02540ProteinID:KRH02540.1
InterPro:P-loop_NTPasePFAM:PF08423PFAM:PF14520PIRSF:PIRSF005856PFscan:PS50162PFscan:PS50163
PANTHER:PTHR22942PANTHER:PTHR22942:SF45InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bdInterPro:RecA_monomer-monomer_interfaceSMART:SM00382
SUPFAM:SSF47794SUPFAM:SSF52540TIGRFAMs:TIGR02239UniParc:UPI000233E0F6SEG:seg:
Description
hypothetical protein
Coordinates
chr17:+:3330460..3333087
Molecular Weight (calculated)
37161.6 Da
IEP (calculated)
5.281
GRAVY (calculated)
-0.151
Length
343 amino acids
Sequence
(BLAST)
001: MMAATMEQQQ QRPQQQDEAE EIQHGPLPVE QLQASGIAAT DVKKLKDAGI CTVESVAYTP RKDLLQIKGI SEAKVDKIIE AASKLVPMGF TSASELHAQR
101: DAIIQITTGS TELDKILEGG VETGSITELY GEFRSGKTQL CHTLCVTCQL PLDQGGGEGK AMYIDAEGTF RPQRLLQIAD RFGLNGADVL ENVAYARAYN
201: TDHQSRLLLE AASMMVETRF AVMIVDSATA LYRTDFSGRG ELSARQMHLA KFLRSLQKLA DEFGVAIVIT NQVVSQVDGS AVFAGPQIKP IGGNIMAHAT
301: TTRLALRKGR GEERICKVIS SPCLAEAEAR FQICAEGVSD VKD
Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)
001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD
Arabidopsis Description
RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.