CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98621
EER99597
EES07568
OQU78622
OQU79150
OQU83843
OQU84696

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	EES07568	AT3G19210.1	17227544
AT5G20850.1	EES07568	AT3G19210.1	18430956
AT5G20850.1	OQU78622	AT3G22880.1	15014444
AT5G20850.1	OQU84696	AT3G22880.1	15014444
AT5G20850.1	OQU78622	AT3G22880.1	16415210
AT5G20850.1	OQU84696	AT3G22880.1	16415210
AT5G20850.1	EER98621	AT4G29170.1	17937504
AT5G20850.1	EER99597	AT5G20850.1	15014444
AT5G20850.1	OQU79150	AT5G20850.1	15014444
AT5G20850.1	OQU83843	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99597	Sorghum	cytosol	95.99	97.38
Zm00001d021898_P001	Maize	cytosol	94.27	96.76
Os11t0615800-01	Rice	cytosol	92.55	95.28
VIT_11s0016g00340.t01	Wine grape	cytosol	86.82	89.91
OQU79150	Sorghum	cytosol	88.54	87.78
Solyc07g017540.2.1	Tomato	cytosol	85.96	87.72
KRH19405	Soybean	cytosol	85.39	86.63
KRH02540	Soybean	cytosol	85.1	86.59
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	27.51	85.71
AT5G20850.1	Thale cress	cytosol	83.95	85.67
Bra006580.1-P	Field mustard	cytosol	83.67	85.38
Bra002334.1-P	Field mustard	cytosol	83.67	85.38
CDX92430	Canola	cytosol	77.36	84.64
CDY16571	Canola	cytosol	76.79	84.01
CDX88837	Canola	cytosol	77.65	83.64
CDX70947	Canola	cytosol	77.65	83.64
OQU84696	Sorghum	nucleus	49.86	50.58
OQU78622	Sorghum	nucleus	47.85	49.7
KXG31586	Sorghum	cytosol	22.35	27.66
EES18935	Sorghum	cytosol, peroxisome, plastid	24.07	23.08
OQU85146	Sorghum	plastid	20.92	22.96

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	UniProt:A0A1Z5RJA1	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51
InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000150	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0006974
GO:GO:0007049	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:1990426	InterPro:IPR020587	InterPro:IPR020588	EnsemblPlants:OQU83843	ProteinID:OQU83843
ProteinID:OQU83843.1	InterPro:P-loop_NTPase	PFAM:PF08423	PFAM:PF14520	PIRSF:PIRSF005856	PFscan:PS50162
PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SMART:SM00382	EnsemblPlantsGene:SORBI_3005G188200	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI000B8BAE09
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:67279209..67283335

Molecular Weight (calculated)

37314.8 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.095

Length

349 amino acids

Sequence
(BLAST)

001: MSAAQQKQKA AASASAAGAE QEGEGEHGAF PIEQLQASGI AALDVKKLKD SGLHTVEAVA YTPRKDLVQI KGISEAKVDK IIEAASKIVP LGFTSASQLH
101: AQRLEIIQVT TGSRELDKIL EGGIETGSIT EIYGEFRSGK TQLCHTLCVT CQLPLDQGGG EGKAMYIDAE GTFRPQRLLQ IADRFGLNGA DVLENVAYAR
201: AYNTDHQSRL LLEAASMMIE TRFALMVVDS ATALYRTDFS GRGELSARQM HMAKFLRSLQ KLADEFGVAV VITNQVVAQV DGSAMFAGPQ IKPIGGNIMA
301: HASTTRLALR KGRGEERICK VISSPCLAEA EARFQIASEG VADVKDCAS

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.