CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016839_P001	Maize	plastid	85.85	93.81
Os02t0562100-00	Rice	plastid	77.36	84.83
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	73.9	82.75
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	73.58	82.39
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	74.53	77.7
GSMUA_Achr9P13630_001	Banana	cytosol	54.72	61.7
HORVU6Hr1G046290.5	Barley	plastid	72.96	61.38
KRH01614	Soybean	nucleus	43.08	47.57
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	44.65	47.33
Solyc07g055170.1.1	Tomato	cytosol	39.31	43.86
PGSC0003DMT400052651	Potato	nucleus	38.99	43.21
AT5G57450.2	Thale cress	nucleus	39.62	41.45
CDY11869	Canola	cytosol	27.36	37.83
Bra006820.1-P	Field mustard	mitochondrion	37.42	35.95
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	27.04	33.2
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	30.5	31.7
KXG31586	Sorghum	cytosol	19.18	21.63
OQU79150	Sorghum	cytosol	23.58	21.31
EER99597	Sorghum	cytosol	22.64	20.93
OQU83843	Sorghum	cytosol	22.96	20.92
OQU84696	Sorghum	nucleus	20.75	19.19
OQU78622	Sorghum	nucleus	20.13	19.05
EES18935	Sorghum	cytosol, peroxisome, plastid	20.75	18.13

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	UniProt:A0A1Z5RP56	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588	EnsemblPlants:OQU85146	ProteinID:OQU85146
ProteinID:OQU85146.1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PRINTS:PR01874	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd	EnsemblPlantsGene:SORBI_3004G181500	SUPFAM:SSF52540	UniParc:UPI000B425918
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:53430497..53436965

Molecular Weight (calculated)

34431.8 Da

IEP (calculated)

10.672

GRAVY (calculated)

-0.068

Length

318 amino acids

Sequence
(BLAST)

001: MRPPAPKVPS AASSSSYSQR EPRPENPLLL LPSSRVTKLS LGCPLLDRLL SGGLPAASVT EIAGESATGK TQLCLQLALL APQSPLSASS LFLHSDLPFP
101: LHRLRRLAPK SRPDILDHVL VAAAHSPTDL LSLLARAQRL LANPGRSPHR LPIRLILLDS IASLFRADFD ASPADLRRRS ALFFQISAKL KELAYRHQCV
201: VVVTNQVVDV VEEGAGNTVA WSSGRRVSPA LGIAWANCVN MRLFLTREVG GDGASGSARR RMKVAFAPHL PERSCEFMIR RDGVFGVEPA ESYCPKKFQN
301: AQALGSHQNA HKVQCNLG

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.