Factsheet for TraesCS6A01G199100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	91.8	98.59
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	91.8	98.59
Zm00001d016839_P001	Maize	plastid	77.38	81.1
Os02t0562100-00	Rice	plastid	76.39	80.34
OQU85146	Sorghum	plastid	77.7	74.53
HORVU6Hr1G046290.5	Barley	plastid	89.51	72.22
GSMUA_Achr9P13630_001	Banana	cytosol	56.07	60.64
KRH01614	Soybean	nucleus	45.25	47.92
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	46.89	47.67
Solyc07g055170.1.1	Tomato	cytosol	42.62	45.61
PGSC0003DMT400052651	Potato	nucleus	42.62	45.3
AT5G57450.2	Thale cress	nucleus	40.66	40.79
CDY11869	Canola	cytosol	27.54	36.52
Bra006820.1-P	Field mustard	mitochondrion	38.36	35.35
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	28.2	33.2
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	31.48	31.37
TraesCS7A01G384800.1	Wheat	cytosol	22.62	20.12
TraesCS2A01G208200.1	Wheat	cytosol	19.02	20.0
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	21.31	17.76
TraesCS5A01G133000.1	Wheat	nucleus	19.67	17.34

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PRINTS:PR01874	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6A01G199100	EnsemblPlants:TraesCS6A01G199100.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:-:313297570..313298658

Molecular Weight (calculated)

33014.2 Da

IEP (calculated)

10.552

GRAVY (calculated)

0.008

Length

305 amino acids

Sequence
(BLAST)

001: MRPPAPKTSA YSQQEPRPEN LLLLASPRAA KLSLGCPLLD RLLSGGLPAA SVTEIAGESA AGKTQLCLQL ALLAPLSPHP SSSLFLCSDV PFPLRRLRLL
101: APKSRPDLLD HVLVAAVHSP SDLLSLLSRA QYHLSHPSRS PHPLPIRVIL LDSIASLFRA DFDASPADLK RRSGLFFKIS AKLKELAHRH QCVVVVTNQV
201: VDVVEGNTGN TVAWSSGRQV SPALGLAWAN CVNTRLFLTR EVDSNGGSAR RHMKVAFAPH LPVRTCEFVI RRDGVFGVEP AQRSFWGCGE LMASKLVMKS
301: QGGQK

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.