Factsheet for HORVU6Hr1G046290.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	71.69	95.42
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	71.69	95.42
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	72.22	89.51
Zm00001d016839_P001	Maize	plastid	60.32	78.35
Os02t0562100-00	Rice	plastid	60.05	78.28
OQU85146	Sorghum	plastid	61.38	72.96
GSMUA_Achr9P13630_001	Banana	cytosol	44.18	59.22
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	37.57	47.33
KRH01614	Soybean	nucleus	35.98	47.22
Solyc07g055170.1.1	Tomato	cytosol	34.39	45.61
PGSC0003DMT400052651	Potato	nucleus	34.39	45.3
AT5G57450.2	Thale cress	nucleus	32.28	40.13
CDY11869	Canola	cytosol	22.75	37.39
Bra006820.1-P	Field mustard	mitochondrion	31.48	35.95
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	23.28	33.98
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	26.45	32.68
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	19.58	20.05
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	17.2	17.62
HORVU5Hr1G040730.2	Barley	nucleus	15.61	17.05
HORVU0Hr1G003380.15	Barley	cytosol	8.73	13.47

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	UniProt:A0A287U2U2	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:HORVU6Hr1G046290	EnsemblPlants:HORVU6Hr1G046290.5	InterPro:IPR020588	InterPro:P-loop_NTPase
PFAM:PF08423	PRINTS:PR01874	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd
SUPFAM:SSF52540	UniParc:UPI000B468C8F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:270024519..270027575

Molecular Weight (calculated)

40955.9 Da

IEP (calculated)

11.280

GRAVY (calculated)

-0.038

Length

378 amino acids

Sequence
(BLAST)

001: GPKRDSGPLS IPRQFEPQIV KSPNPSAARL PAMRPPAPKN SAYGQQEPRP GNLLFFLAPH RAAKLSLGCP LLDRLLSGGL PAASVTEIAG ESAAGKTQIC
101: LQLALLAPLS PHPSSSLFLC SDVPFPLRRL RLLAPKSRPD LLDHVLVAAV HSPSDLLSLL SRAQYHLSHP SHSPHRLPTR VILLDSIASL FRADFDASPA
201: DLKRRSGLFF KISAKLKELA HRHQCVVVVT NQVVDVVEGN TGNTVAWSSG RQVSPALGLA WANCVNTRLF VTREVDSNGG SARRHMKVAF APHLPVRTCE
301: FVIRRDGVFG VEPAQRGRHG HGLPAFLPIG PTMMTTGSAM SPSVSTVPWR MGFLPLSLHH IQARRRLDLL SVRDCVLS

Best Arabidopsis Sequence Match ( AT5G57450.1 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.