Factsheet for GSMUA_Achr9P13630_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016839_P001	Maize	plastid	63.48	61.51
Os02t0562100-00	Rice	plastid	63.12	61.38
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	60.64	60.21
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	60.28	59.86
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	62.41	58.67
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	60.64	56.07
OQU85146	Sorghum	plastid	61.7	54.72
Solyc07g055170.1.1	Tomato	cytosol	54.96	54.39
PGSC0003DMT400052651	Potato	nucleus	54.26	53.31
KRH01614	Soybean	nucleus	53.9	52.78
AT5G57450.2	Thale cress	nucleus	51.42	47.7
HORVU6Hr1G046290.5	Barley	plastid	59.22	44.18
CDY11869	Canola	cytosol	34.75	42.61
Bra006820.1-P	Field mustard	mitochondrion	50.0	42.6
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	35.11	38.22
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	40.78	37.58
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	11.7	29.46
GSMUA_Achr8P16810_001	Banana	cytosol	29.43	25.0
GSMUA_Achr5P14000_001	Banana	cytosol	24.47	23.47
GSMUA_Achr8P21040_001	Banana	nucleus	25.53	19.15
GSMUA_Achr8P26880_001	Banana	nucleus	25.18	18.39
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	5.67	8.94

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr9G13630_001	EnsemblPlants:GSMUA_Achr9P13630_001	EnsemblPlants:GSMUA_Achr9T13630_001	InterPro:IPR020588
UniProt:M0U021	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PRINTS:PR01874	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI000294A392	SEG:seg

Description

DNA repair protein XRCC3 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G13630_001]

Coordinates

chr9:-:8879256..8880104

Molecular Weight (calculated)

30275.7 Da

IEP (calculated)

9.095

GRAVY (calculated)

0.146

Length

282 amino acids

Sequence
(BLAST)

001: MFPGIEPLNP LLLPAQKLTL GCPVLDRLLR GGLPVGSVTE IAGESAAGKT QLCLQLLLAA LLPPSRGGLS AASLFIHSEF PFPIRRLHAL SSSSSAADPL
101: GHIFVAAAHS PDDLLSLLAT ADGLLARPPT HLPVRLIVVD SIAALFRSDF DNNPKDLKKR SFLFFKIAAK LKEQARRFGS VAVVTNQVVD VVGSEEGANG
201: QRVGNYASLW SSGRRVCPAL GLSWANCVNT RLFLSRKDEI ADDAGSSRTR RWMQVVFAPH LPEASCEFVI VREGVSGIEP QR

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.