Factsheet for Solyc07g055170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052651	Potato	nucleus	95.09	94.43
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	63.51	60.33
GSMUA_Achr9P13630_001	Banana	cytosol	54.39	54.96
KRH01614	Soybean	nucleus	51.23	50.69
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	46.32	46.48
AT5G57450.2	Thale cress	nucleus	49.47	46.38
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	45.96	46.13
Bra006820.1-P	Field mustard	mitochondrion	52.63	45.32
Os02t0562100-00	Rice	plastid	44.91	44.14
Zm00001d016839_P001	Maize	plastid	44.91	43.99
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	45.61	42.62
CDY11869	Canola	cytosol	34.39	42.61
OQU85146	Sorghum	plastid	43.86	39.31
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	42.11	39.22
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	35.44	39.0
HORVU6Hr1G046290.5	Barley	plastid	45.61	34.39
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	28.77	22.1
Solyc07g017540.2.1	Tomato	cytosol	25.96	21.64
Solyc05g050960.2.1	Tomato	cytosol	16.14	21.6
Solyc09g082790.2.1	Tomato	nucleus	24.56	20.96
Solyc05g050950.2.1	Tomato	plastid	7.02	16.26

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000150
GO:GO:0000166	GO:GO:0000400	GO:GO:0000707	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005657
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006312	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787	GO:GO:0033063	GO:GO:0042148
GO:GO:0045003	GO:GO:0051321	InterPro:IPR020588	UniProt:K4CG56	InterPro:P-loop_NTPase	PFAM:PF08423
PIRSF:PIRSF005856	PRINTS:PR01874	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g055170.1	EnsemblPlants:Solyc07g055170.1.1	UniParc:UPI000276C821	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:63295509..63296366

Molecular Weight (calculated)

31848.5 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.063

Length

285 amino acids

Sequence
(BLAST)

001: MKPEDLLQRL SPTHTQKCTV GCLVLDRLLG GGIPCNSITE LVAESGCGKT QISLQLLLSA QLPTSLGGLS GSSIYLYSES PFPVRRLHQL SSSFPTLHNP
101: LGKILTHPLH SAHHLFDVLS QLDSLLSSRL DSPSQIKLIV IDSIAALFRF EFENNPRDLK QRSGLFFRIS SKLKEQARRF GLAVVVINQV VDVMNDTDGL
201: RIGNSTCWYT SERKVCAALG LSWANCVNTR LFLSRQEERV AREVNGDDCF STQTRRFIRV AFAPHLPDSY CEFVISREKI FGLER

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.