Factsheet for TraesCS6D01G182800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	98.59	98.59
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	98.59	91.8
Zm00001d016839_P001	Maize	plastid	82.39	80.41
Os02t0562100-00	Rice	plastid	81.34	79.66
OQU85146	Sorghum	plastid	82.75	73.9
HORVU6Hr1G046290.5	Barley	plastid	95.42	71.69
GSMUA_Achr9P13630_001	Banana	cytosol	60.21	60.64
KRH01614	Soybean	nucleus	48.94	48.26
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	50.7	48.0
Solyc07g055170.1.1	Tomato	cytosol	46.48	46.32
PGSC0003DMT400052651	Potato	nucleus	46.48	45.99
AT5G57450.2	Thale cress	nucleus	43.66	40.79
CDY11869	Canola	cytosol	30.28	37.39
Bra006820.1-P	Field mustard	mitochondrion	41.9	35.95
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	30.99	33.98
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	34.51	32.03
TraesCS7D01G381300.1	Wheat	cytosol	25.0	20.76
TraesCS2D01G214900.1	Wheat	cytosol	20.77	20.34
TraesCS5D01G141200.1	Wheat	nucleus	22.54	18.6
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	23.24	17.79

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PRINTS:PR01874	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:RecA_ATP-bd	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS6D01G182800	EnsemblPlants:TraesCS6D01G182800.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:-:217759025..217760127

Molecular Weight (calculated)

30770.5 Da

IEP (calculated)

10.401

GRAVY (calculated)

0.044

Length

284 amino acids

Sequence
(BLAST)

001: MRPPAPKTSA YSEQEPRPEN LLLLLAPPRA AKLSLGCPLL DRLLSGGLPA ASVTEIAGES AAGKTQLCLQ LALLAPLSPH PSSSLFLCSD VPFPLRRLRL
101: LAPKSRPDLL DHVLVAAVHS PSDLLSLLSR AQYHLSHPSR SPHPLPIRVI LLDSIASLFR ADFDASPADL KRRSGLFFKI SAKLKELAHR HQCVVVVTNQ
201: VVDVVEGTTG NTVAWSSGRQ VSPALGLAWA NCVNTRLFLT REVDSNGGSA RRHMKVAFAP HLPVRTCEFV IRRDGVFGVE PAQR

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.