CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	60.42	58.0
GSMUA_Achr9P13630_001	Banana	cytosol	52.78	53.9
PGSC0003DMT400052651	Potato	nucleus	52.43	52.61
Solyc07g055170.1.1	Tomato	cytosol	50.69	51.23
AT5G57450.2	Thale cress	nucleus	51.74	49.01
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	48.26	48.94
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	48.26	48.94
Os02t0562100-00	Rice	plastid	48.61	48.28
Zm00001d016839_P001	Maize	plastid	47.92	47.42
Bra006820.1-P	Field mustard	mitochondrion	53.47	46.53
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	47.92	45.25
OQU85146	Sorghum	plastid	47.57	43.08
CDY11869	Canola	cytosol	34.38	43.04
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	43.06	40.52
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	34.38	38.22
HORVU6Hr1G046290.5	Barley	plastid	47.22	35.98
KRH65320	Soybean	mitochondrion, nucleus	26.74	22.19
KRH02540	Soybean	cytosol	26.39	22.16
KRH19405	Soybean	cytosol	26.39	22.09
KRH35438	Soybean	nucleus	25.35	21.16
KRH10360	Soybean	mitochondrion, nucleus, plastid	26.04	19.84
KRG91377	Soybean	cytosol	7.29	14.48

Protein Annotations

EntrezGene:100799681	MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:ACUP02011523	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	EnsemblPlantsGene:GLYMA_18G288200	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000707	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697
GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005657	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043
GO:GO:0016787	GO:GO:0033063	GO:GO:0042148	UniProt:I1N544	InterPro:IPR020588	EnsemblPlants:KRH01614
ProteinID:KRH01614	ProteinID:KRH01614.1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI000233F554	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:56795210..56796076

Molecular Weight (calculated)

31786.5 Da

IEP (calculated)

8.375

GRAVY (calculated)

0.005

Length

288 amino acids

Sequence
(BLAST)

001: MRAENLLQLQ HRTQKCTLGC PVLDRCLAGG VPCASVTEFV GESGCGKTQL CLQLALSAQL PPSHGGLSAS SIFIHTEFPF PFRRLRHLSR AFRASHPDLP
101: CSDPCDRVFL RAVHSAHELL NLIPTIETFL LHSKSPWRPV RIIVIDSIAA LFRSDFENTG SDLRRRSSLF FGISGGLRQL AKRFGIAVVV TNQVVDLIGD
201: GDVSFGSLGN GLYSSGRRVC PALGLAWAHC VNSRLFLSKD EDEPPVKTRK MRVVFAPHLP HSSCEYVIKG EGVFGVEMMQ HREEEINL

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.