CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	86.96	77.22
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	66.09	49.67
AT5G57450.2	Thale cress	nucleus	63.48	48.03
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	48.7	37.33
GSMUA_Achr9P13630_001	Banana	cytosol	42.61	34.75
PGSC0003DMT400052651	Potato	nucleus	43.04	34.49
Solyc07g055170.1.1	Tomato	cytosol	42.61	34.39
KRH01614	Soybean	nucleus	43.04	34.38
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	37.39	30.28
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	37.39	30.28
Os02t0562100-00	Rice	plastid	36.96	29.31
Zm00001d016839_P001	Maize	plastid	36.96	29.21
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	36.52	27.54
OQU85146	Sorghum	plastid	37.83	27.36
HORVU6Hr1G046290.5	Barley	plastid	37.39	22.75
CDY68195	Canola	cytosol, nucleus, plastid	20.87	15.79
CDX88837	Canola	cytosol	21.3	15.12
CDX70947	Canola	cytosol	21.3	15.12
CDY16571	Canola	cytosol	20.43	14.73
CDX92430	Canola	cytosol	20.43	14.73
CDY18933	Canola	plastid	21.3	14.12
CDX74725	Canola	nucleus	21.3	12.13
CDY46610	Canola	nucleus	15.65	10.84
CDX92963	Canola	nucleus	3.91	10.71
CDY53383	Canola	cytosol	20.43	10.24
CDX77188	Canola	cytosol	19.57	9.8
CDY34225	Canola	mitochondrion	15.65	9.55

Protein Annotations

EnsemblPlants:CDY11869	EnsemblPlantsGene:GSBRNA2T00060699001	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:P-loop_NTPase	PANTHER:PTHR22942
PANTHER:PTHR22942:SF24	PFAM:PF08423	ProteinID:CDY11869	ProteinID:CDY11869.1	SUPFAM:SSF52540	UniParc:UPI0004EE5376
UniProt:A0A078FFX4	MapMan:13.3.6.4.3.2	:	:	:	:

Description

BnaC03g12950DBnaC03g12950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFX4]

Coordinates

chrLK032015:+:160510..161792

Molecular Weight (calculated)

25341.6 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.030

Length

230 amino acids

Sequence
(BLAST)

001: MKPRSLLSQS PTSLKLTTGC ETLDECLRGG FPCDSLTEIL SISTPSFPSR FAVSISSLDR FIYRTLASTR TTTIILAIMC LYKTSTLSEF ENTPSDLRKR
101: ASCFFKISGK LKQLANKFGL AVVITNQVTD FVESSDGLSG LRIGNLRCLY SSGRRVVPAL GLAWANCVNS RVFISRSDDI VCQERRDDDE SGSSLVSGRA
201: RRRLDIVFSP HLPPSSCEFM ITRDGICGVR

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.