CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68195	Canola	cytosol, nucleus, plastid	87.61	100.0
CDX74725	Canola	nucleus	98.56	84.65
Bra004897.1-P	Field mustard	nucleus	89.34	83.78
AT2G45280.2	Thale cress	nucleus, plastid	89.91	80.62
Solyc05g050960.2.1	Tomato	cytosol	47.26	77.0
VIT_15s0048g00380.t01	Wine grape	nucleus	72.62	72.83
KRH65320	Soybean	mitochondrion, nucleus	71.47	71.47
PGSC0003DMT400018063	Potato	nucleus	73.78	70.14
Solyc05g050950.2.1	Tomato	plastid	23.92	67.48
GSMUA_Achr5P14000_001	Banana	cytosol	55.62	65.65
TraesCS2D01G214900.1	Wheat	cytosol	54.18	64.83
KXG31586	Sorghum	cytosol	52.16	64.18
TraesCS2A01G208200.1	Wheat	cytosol	53.6	64.14
Zm00001d044278_P001	Maize	cytosol	53.89	63.61
Os01t0578000-01	Rice	cytosol	61.96	61.6
TraesCS2B01G234700.3	Wheat	cytosol	53.89	59.18
HORVU0Hr1G003380.15	Barley	cytosol	30.84	43.67
CDX92963	Canola	nucleus	8.65	35.71
CDY46610	Canola	nucleus	26.8	28.01
CDY16571	Canola	cytosol	25.36	27.59
CDX92430	Canola	cytosol	25.36	27.59
CDX88837	Canola	cytosol	25.65	27.47
CDX70947	Canola	cytosol	25.65	27.47
CDY34225	Canola	mitochondrion	26.8	24.67
CDY11869	Canola	cytosol	14.12	21.3
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	18.16	20.59
CDY53383	Canola	cytosol	22.48	16.99
CDX77188	Canola	cytosol	22.48	16.99

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	GO:A0A078G2P2	UniProt:A0A078G2P2	EnsemblPlants:CDY18933	ProteinID:CDY18933
ProteinID:CDY18933.1	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00006142001	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540
UniParc:UPI0004EDE4F7	SEG:seg	:	:	:	:

Description

BnaC04g04170DBnaC04g04170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2P2]

Coordinates

chrLK032090:-:490649..492290

Molecular Weight (calculated)

38324.8 Da

IEP (calculated)

7.812

GRAVY (calculated)

-0.160

Length

347 amino acids

Sequence
(BLAST)

001: METSRLPLSS SIRGKLISAG YTSLSSISSV SSTDLARDVK ITESEAFEIL KMANQISGSS SCNGRSSSLV NGARNAWDML NEEEALPRIT TSCSDLDKIL
101: GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPREFGGL GGKAIYIDTE GSFMVERALQ IAQACVEDME EYTGYMHKHF KASQVQMKPR DILENIFYFR
201: VCSYTEQIAL VNHLDKFISE NKDVKVVIVD SITFHFRQDF DDLAQRTRVL SEMALKFMKL AKKFSLAVVL LNQVTTKYTE GSFQLALALG DSWSHSCTNR
301: VILYWNGDER YAYIDKSPSL PSASASYTVT GRGLRNSSSS SKRVKMM

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.