CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53383	Canola	cytosol	96.51	96.51
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	70.15	86.79
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	55.77	69.0
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	52.72	65.23
KRH10360	Soybean	mitochondrion, nucleus, plastid	53.59	65.08
PGSC0003DMT400065314	Potato	cytosol	29.85	62.56
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	9.15	60.87
GSMUA_Achr8P21040_001	Banana	nucleus	46.84	57.18
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	43.79	55.37
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	44.44	55.28
EES18935	Sorghum	cytosol, peroxisome, plastid	43.57	54.95
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	44.01	54.74
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	43.57	54.64
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	44.01	54.45
Zm00001d010986_P001	Maize	vacuole	41.39	53.07
CDX70947	Canola	cytosol	17.65	25.0
CDX92963	Canola	nucleus	4.58	25.0
CDX88837	Canola	cytosol	17.65	25.0
CDY16571	Canola	cytosol	17.21	24.76
CDX92430	Canola	cytosol	17.21	24.76
CDY68195	Canola	cytosol, nucleus, plastid	16.34	24.67
CDY18933	Canola	plastid	16.99	22.48
CDY46610	Canola	nucleus	15.9	21.99
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	13.29	19.93
CDY11869	Canola	cytosol	9.8	19.57
CDX74725	Canola	nucleus	17.21	19.55
CDY34225	Canola	mitochondrion	15.9	19.36

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CQ44	InterPro:AAA+_ATPase	EnsemblPlants:CDX77188	ProteinID:CDX77188
ProteinID:CDX77188.1	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033063
EnsemblPlantsGene:GSBRNA2T00127829001	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd	SMART:SM00382	SUPFAM:SSF47789	SUPFAM:SSF52540
UniParc:UPI0004EE133D	:	:	:	:	:

Description

BnaC04g39830D

Coordinates

chrLK031809:-:1892321..1896486

Molecular Weight (calculated)

50686.5 Da

IEP (calculated)

9.072

GRAVY (calculated)

-0.111

Length

459 amino acids

Sequence
(BLAST)

001: MANKLIGEID LHKRISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIQ SAVRLISEAA SPPCQSARSL LEQKVENEYL LGHLPTHLKG LDSALCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPK AYGGLDGRVI YIDVESKFSS RRVIEMGLKS FPEVFHLKGM AQEMAGRILV LRPTSLSDFT ESIQELKESI
201: LKNQVKLLVI DSMTALLLGE NKPGAQRQQH QLGWHISFLK SLAEFARIPI VVTNQVRSQN RDETSQYSFQ AKLKDGFEEH TRTYDSHLVA ALGINWAHAV
301: NIRLVLESKS GQRIIKVAKS PMSPPLAFPF HITSAGISLL SDDGTELKGP GINNIHARAK WKDRFQEHTR RYDSHLVAAL GINWDHAVTI RLVLEAKSGQ
401: RIIKVAKSPM SPLYVLPFHI TSEGISLLSD DGAELKGRGI NNIHARGHSD MINFNGDCS

Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.