Factsheet for AT2G28560.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53383	Canola	cytosol	88.41	71.46
CDX77188	Canola	cytosol	86.79	70.15
Bra035691.1-P	Field mustard	cytosol	87.6	70.04
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	69.81	69.81
KRH10360	Soybean	mitochondrion, nucleus, plastid	67.92	66.67
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	66.04	66.04
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	11.86	63.77
PGSC0003DMT400065314	Potato	cytosol	37.47	63.47
GSMUA_Achr8P21040_001	Banana	nucleus	58.76	57.98
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	55.26	56.47
EES18935	Sorghum	cytosol, peroxisome, plastid	54.72	55.77
Zm00001d010986_P001	Maize	vacuole	53.1	55.03
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	54.72	55.01
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	54.18	54.92
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	54.45	54.74
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	54.72	54.72
AT5G57450.2	Thale cress	nucleus	19.41	23.68
AT5G20850.1	Thale cress	cytosol	21.29	23.1
AT3G22880.1	Thale cress	nucleus	20.75	22.38
AT2G45280.2	Thale cress	nucleus, plastid	21.56	20.67

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:817404	InterPro:AAA+_ATPase	ProteinID:AEC08140.1	ArrayExpress:AT2G28560
EnsemblPlantsGene:AT2G28560	RefSeq:AT2G28560	TAIR:AT2G28560	RefSeq:AT2G28560-TAIR-G	EnsemblPlants:AT2G28560.1	TAIR:AT2G28560.1
Symbol:ATRAD51B	Unigene:At.38605	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0033063	InterPro:IPR020588	RefSeq:NP_180423.3	InterPro:P-loop_NTPase	PFAM:PF08423
PIRSF:PIRSF005856	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0025281	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd	SMART:SM00382	SUPFAM:SSF47789
SUPFAM:SSF52540	UniParc:UPI00005DC2CA	:	:	:	:

Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]

Coordinates

chr2:-:12237052..12239146

Molecular Weight (calculated)

40663.5 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.005

Length

371 amino acids

Sequence
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.