Factsheet for GSMUA_Achr8P21040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	62.23	64.46
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	62.5	63.34
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	61.97	63.14
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	61.44	63.11
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	61.7	62.87
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	61.97	62.8
EES18935	Sorghum	cytosol, peroxisome, plastid	60.37	62.36
PGSC0003DMT400065314	Potato	cytosol	35.64	61.19
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	11.17	60.87
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	59.57	60.38
Zm00001d010986_P001	Maize	vacuole	56.91	59.78
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	57.98	58.76
KRH10360	Soybean	mitochondrion, nucleus, plastid	58.78	58.47
CDY53383	Canola	cytosol	57.45	47.06
CDX77188	Canola	cytosol	57.18	46.84
Bra035691.1-P	Field mustard	cytosol	56.91	46.12
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	7.71	25.89
GSMUA_Achr9P13630_001	Banana	cytosol	19.15	25.53
GSMUA_Achr5P14000_001	Banana	cytosol	19.15	24.49
GSMUA_Achr8P16810_001	Banana	cytosol	21.54	24.4
GSMUA_Achr8P26880_001	Banana	nucleus	21.01	20.47
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	6.91	14.53

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0033063	EnsemblPlantsGene:GSMUA_Achr8G21040_001	EnsemblPlants:GSMUA_Achr8P21040_001	EnsemblPlants:GSMUA_Achr8T21040_001
InterPro:IPR020588	UniProt:M0TSA7	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI00029694C2	:	:	:	:	:

Description

DNA repair protein RAD51 homolog 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G21040_001]

Coordinates

chr8:-:26050086..26054773

Molecular Weight (calculated)

41041.7 Da

IEP (calculated)

6.577

GRAVY (calculated)

0.136

Length

376 amino acids

Sequence
(BLAST)

001: MSNKLISEMG LPASIANVFA ARNDALSLPE FDLVALLGLD LDQVRSAVAR ISEIACPPCR TALSLLEDRA RSACHLPTCL RGLDDALCGG IPFGALTELV
101: GPSGIGKTQF CLKLALLAAL PTCYGGLNGR IIYMDTESKF ISSRLIEIGK SSFPHIFQSE GMAQEMAGRI VVLRPSSLSE FTESLQQIKL MILQHDVKLL
201: IVDSMAAILL GENERSTTVQ KQHSWRWPLS FLKSLAEFSQ IPIVVTNQVR SQNNDEVFHY SFQAQKNDTG KTSERLESHL TAALGIQWAH AVTIRLIFEA
301: HSGQRFIKVS KSPTSPAVAF PFVVESSGIS LLSHDGLEVM GAEICTIHCQ DQDTTFLTRG PSHTLVFNAS LQQFLG

Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.