Factsheet for HORVU1Hr1G011840.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	97.83	97.83
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	98.1	97.57
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	95.12	95.9
EES18935	Sorghum	cytosol, peroxisome, plastid	83.2	84.34
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	81.57	82.92
Zm00001d010986_P001	Maize	vacuole	78.05	80.45
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	62.33	61.99
GSMUA_Achr8P21040_001	Banana	nucleus	62.87	61.7
PGSC0003DMT400065314	Potato	cytosol	36.31	61.19
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	59.89	59.57
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	11.11	59.42
KRH10360	Soybean	mitochondrion, nucleus, plastid	57.18	55.82
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	54.74	54.45
CDY53383	Canola	cytosol	56.1	45.1
CDX77188	Canola	cytosol	55.28	44.44
Bra035691.1-P	Field mustard	cytosol	55.56	44.18
HORVU5Hr1G040730.2	Barley	nucleus	22.22	23.7
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	21.68	21.68
HORVU6Hr1G046290.5	Barley	plastid	17.62	17.2
HORVU0Hr1G003380.15	Barley	cytosol	11.11	16.73

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287EN39	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0033063	EnsemblPlantsGene:HORVU1Hr1G011840	EnsemblPlants:HORVU1Hr1G011840.1
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF15	InterPro:RAD51B	InterPro:RecA_ATP-bd	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000B482006
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:28822521..28827010

Molecular Weight (calculated)

39990.8 Da

IEP (calculated)

7.504

GRAVY (calculated)

0.116

Length

369 amino acids

Sequence
(BLAST)

001: MANKLVSDMC LPPHLAHLLA ARRLTTAKDV LSLPEVELMS LLDAGLATAR DAVRHVSEFA CPPCQTVLAL LEERVRLGGG GRLATTLCGL DEALGGGIPL
101: GKLTEVVGPS GIGKTQFCLK LALLATLPEC YGGLNGRVVY IDTESKFSSR RMIEIGQKSF PQIFRQEGLA QKMAGRILVM RPTSLSDFTK SLEQMKVTLL
201: QNDVKLLIVD SVAAFMSSEN ERGTTGFTQH PLRWALSFLK SIAELTRIPV VVSNQVRSQS NDDGYHYSFE VKRMGDGVGA ERLESHLVAA LGIQWAHAVT
301: IRLVFESHSG QRFIKVAKSP MSPAVAFPFI VESSGITLLN DDGIDVSGPE ITSIRCQGQN LLGLLSFEN

Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.