Factsheet for PGSC0003DMT400065314

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	97.26	57.41
VIT_06s0004g03600.t01	Wine grape	cytosol, nucleus, plastid	71.69	42.32
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	63.47	37.47
KRH10360	Soybean	mitochondrion, nucleus, plastid	63.93	37.04
HORVU1Hr1G011840.1	Barley	cytosol, nucleus, plastid	61.19	36.31
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	59.36	35.81
GSMUA_Achr8P21040_001	Banana	nucleus	61.19	35.64
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	59.82	35.5
EES18935	Sorghum	cytosol, peroxisome, plastid	58.9	35.44
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	59.82	35.31
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	58.9	35.25
Zm00001d010986_P001	Maize	vacuole	53.88	32.96
CDY53383	Canola	cytosol	64.38	30.72
Bra035691.1-P	Field mustard	cytosol	64.38	30.39
CDX77188	Canola	cytosol	62.56	29.85
PGSC0003DMT400052651	Potato	nucleus	21.92	16.72
PGSC0003DMT400018063	Potato	nucleus	18.72	11.23
PGSC0003DMT400077570	Potato	nucleus	17.35	11.14
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	0.46	1.45

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006950	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0033063	InterPro:IPR020588	UniProt:M1CDR6	InterPro:P-loop_NTPase	PFAM:PF08423	EnsemblPlantsGene:PGSC0003DMG401025391
PGSC:PGSC0003DMG401025391	EnsemblPlants:PGSC0003DMT400065314	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF15	InterPro:RAD51B
InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI000296D001	:	:	:

Description

DNA repair protein RAD51 homolog 2 [Source:PGSC_GENE;Acc:PGSC0003DMG401025391]

Coordinates

chr11:-:44477250..44485000

Molecular Weight (calculated)

24003.8 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.009

Length

219 amino acids

Sequence
(BLAST)

001: MIEIGFNSFP EVFQTEGMAQ EMAGRILVLR PTSLSEFTDS LQKIKVSLFQ HGVKLLIIDS MAALLSGEGV QGPQRQHSLG WHISFIKSVA EFSRIPVVVT
101: NQVRSQSRDG TSHYSFQEQS RGESPVAASK LDSHLVAALG IHWAHAVSIR LIFESRSGQR FIKLAKSPVS PPFAFAFNIT SSGISLLNDD GVEMPGPEIH
201: SISCQGHNDV INFGSEMMH

Best Arabidopsis Sequence Match ( AT2G28560.2 )
(BLAST)

001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGHS DMINFHGDCS

Arabidopsis Description

ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.