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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 3
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES18935 Sorghum cytosol, peroxisome, plastid 82.64 82.42
TraesCS1B01G075900.1 Wheat cytosol, peroxisome, plastid 83.2 81.84
TraesCS1A01G058500.1 Wheat cytosol, nucleus, plastid 82.37 81.69
HORVU1Hr1G011840.1 Barley cytosol, nucleus, plastid 82.92 81.57
TraesCS1D01G059600.2 Wheat cytosol, peroxisome, plastid 82.92 81.13
Zm00001d010986_P001 Maize vacuole 77.14 78.21
PGSC0003DMT400065320 Potato cytosol, extracellular, plastid 11.85 62.32
GSMUA_Achr8P21040_001 Banana nucleus 64.46 62.23
Solyc11g072610.1.1 Tomato cytosol, golgi, plastid 62.53 61.19
VIT_06s0004g03600.t01 Wine grape cytosol, nucleus, plastid 61.43 60.11
PGSC0003DMT400065314 Potato cytosol 35.81 59.36
KRH10360 Soybean mitochondrion, nucleus, plastid 58.68 56.35
AT2G28560.1 Thale cress cytosol, nucleus, plastid 56.47 55.26
CDY53383 Canola cytosol 56.2 44.44
CDX77188 Canola cytosol 55.37 43.79
Bra035691.1-P Field mustard cytosol 55.92 43.75
Os02t0562100-00 Rice plastid 20.39 25.52
Os12t0143800-01 Rice mitochondrion 23.97 25.29
Os11t0146800-01 Rice nucleus 23.97 25.29
Os11t0615800-01 Rice cytosol 22.86 24.48
Os12t0497300-01 Rice cytosol 22.31 23.75
Os01t0578000-01 Rice cytosol 22.59 23.5
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1EntrezGene:4337655InterPro:AAA+_ATPaseProteinID:AAV31221.1EMBL:AK106510
EMBL:AK107571ProteinID:BAF16414.1ProteinID:BAS92026.1InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeProteinID:EEE62151.1
GO:GO:0000003GO:GO:0000150GO:GO:0000166GO:GO:0000400GO:GO:0000707GO:GO:0000724
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003690GO:GO:0003697GO:GO:0003824
GO:GO:0004518GO:GO:0004520GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005657GO:GO:0006139GO:GO:0006259GO:GO:0006281
GO:GO:0006312GO:GO:0006950GO:GO:0007049GO:GO:0007131GO:GO:0008094GO:GO:0008150
GO:GO:0008152GO:GO:0009628GO:GO:0009987GO:GO:0010212GO:GO:0016043GO:GO:0016787
GO:GO:0033063GO:GO:0042148InterPro:IPR020588EnsemblPlantsGene:Os05g0121700EnsemblPlants:Os05t0121700-02InterPro:P-loop_NTPase
PFAM:PF08423PIRSF:PIRSF005856PFscan:PS50162PANTHER:PTHR22942PANTHER:PTHR22942:SF15UniProt:Q60F40
InterPro:RAD51BInterPro:RecA_ATP-bdSMART:SM00382SUPFAM:SSF52540UniParc:UPI000045039ERefSeq:XP_015639331.1
Description
DNA REPAIR PROTEIN RAD51BDNA repair and recombination, RecA-like domain containing protein. (Os05t0121700-01);DNA repair and recombination, RecA-like domain containing protein. (Os05t0121700-02)
Coordinates
chr5:-:1174481..1190593
Molecular Weight (calculated)
39612.1 Da
IEP (calculated)
7.686
GRAVY (calculated)
0.048
Length
363 amino acids
Sequence
(BLAST)
001: MANKLVSEMR LPPHLAHILA ARRLTTAKDV LSLPEVELMG VLDAGIHTAR AAVAHVSEIA CPPYQTALAL LEAFRARGDG RLATTLRGLD EALHGGIPAG
101: KLTEVVGPSG IGKTQFCLKL ALLATLPECY GGLNGRVLYI DTESKFSSRR MIEIGEKSFP QIFRQEGLAQ KMAGRILVLR PTSLSEFTKS LEQMKVTLLQ
201: HDVKLLVVDS MAALMSSEIE KSATGLRQHP LRWALSFLKS IAEFSQIPVV VTNQVRSQSN DDGYRYSFEV EKKYDSNNAE GFESHLVAAL GIQWAHAVTI
301: RLVFEAHSGH RYIKVAKSPM TPAVAFPFTV ESSGIILLSD EGIDVPSPEI TSIRCQGENV LAQ
Best Arabidopsis Sequence Match ( AT2G28560.1 )
(BLAST)
001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F
Arabidopsis Description
ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.