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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 3
  • cytosol 2
  • nucleus 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG31586 Sorghum cytosol 69.63 86.17
TraesCS2D01G214900.1 Wheat cytosol 71.35 85.86
TraesCS2A01G208200.1 Wheat cytosol 70.77 85.17
Zm00001d044278_P001 Maize cytosol 69.91 82.99
TraesCS2B01G234700.3 Wheat cytosol 71.06 78.48
GSMUA_Achr5P14000_001 Banana cytosol 58.74 69.73
Solyc05g050960.2.1 Tomato cytosol 41.55 68.08
VIT_15s0048g00380.t01 Wine grape nucleus 64.76 65.32
KRH65320 Soybean mitochondrion, nucleus 64.47 64.84
CDY68195 Canola cytosol, nucleus, plastid 56.16 64.47
HORVU0Hr1G003380.15 Barley cytosol 44.13 62.86
CDY18933 Canola plastid 61.6 61.96
PGSC0003DMT400018063 Potato nucleus 62.18 59.45
AT2G45280.2 Thale cress nucleus, plastid 61.03 55.04
Bra004897.1-P Field mustard nucleus 57.88 54.59
CDX74725 Canola nucleus 61.89 53.47
Solyc05g050950.2.1 Tomato plastid 18.05 51.22
Os12t0143800-01 Rice mitochondrion 26.93 27.33
Os11t0146800-01 Rice nucleus 26.93 27.33
Os12t0497300-01 Rice cytosol 26.36 26.98
Os11t0615800-01 Rice cytosol 25.79 26.55
Os05t0121700-02 Rice cytosol, mitochondrion, nucleus, plastid 23.5 22.59
Os02t0562100-00 Rice plastid 18.62 22.41
Protein Annotations
MapMan:13.3.6.4.3.1Gene3D:3.40.50.300EntrezGene:4323853EMBL:AK060971ProteinID:BAB32931.1ProteinID:BAB91810.1
ProteinID:BAF05308.1ProteinID:BAS72837.1InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeGO:GO:0000003GO:GO:0000150
GO:GO:0000166GO:GO:0000400GO:GO:0000707GO:GO:0000724GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003690GO:GO:0003697GO:GO:0003824GO:GO:0004518GO:GO:0004520
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005657GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006312GO:GO:0006950
GO:GO:0007049GO:GO:0007131GO:GO:0007140GO:GO:0007141GO:GO:0007143GO:GO:0008094
GO:GO:0008150GO:GO:0008152GO:GO:0009628GO:GO:0009987GO:GO:0010212GO:GO:0016043
GO:GO:0016444GO:GO:0016787GO:GO:0033063GO:GO:0042148GO:GO:0045003GO:GO:0051321
InterPro:IPR020588EnsemblPlantsGene:Os01g0578000EnsemblPlants:Os01t0578000-01InterPro:P-loop_NTPasePFAM:PF08423PIRSF:PIRSF005856
PFscan:PS50162PANTHER:PTHR22942PANTHER:PTHR22942:SF14UniProt:Q9AWX8InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bd
SUPFAM:SSF52540UniParc:UPI00000ABE18RefSeq:XP_015626410.1SEG:seg::
Description
DNA REPAIR PROTEIN RAD51CDNA repair protein, DNA double-strand break repair, synaptonemal complex assembly (Os01t0578000-01);Splicing variant of DNA repair protein RAD51C (Os01t0578000-02);Splicing variant of DNA repair protein RAD51C (Os01t0578000-03)
Coordinates
chr1:-:22353427..22358405
Molecular Weight (calculated)
38112.7 Da
IEP (calculated)
6.789
GRAVY (calculated)
-0.043
Length
349 amino acids
Sequence
(BLAST)
001: MEIADLPIAT SHRANLLAAG YSSLAALSAA SPPRLARDLS IEVHEAEEIL KVAVGANKSK GADGPSTSSV LKGVQNAWDM LSDEQSRRHI NTGSADLNNI
101: LGGGIHCKEV TEIGGVPGVG KTQLGIQLAI NVQIPVEYGG LGGKAVYIDT EGSFMVERVY QIAEGCISDI LEYFPHCHDK APAGQEKLKP ESFLADIYYF
201: RICSYTEQIA VINYLEKFLG EHKDVRIVII DSVTFHFRQD FDDMALRTRV LSGLSLKLMK LSKAYNLAVV LLNQVTTKFT EGSFQLTLAL GDSWSHSCTN
301: RLILYWNGNE RYGFLDKSPS LPVASAPYAV TVKGVRDAVN SNSKRVRVM
Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)
001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM
Arabidopsis Description
ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.