Factsheet for Solyc05g050950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018063	Potato	nucleus	95.94	32.33
VIT_15s0048g00380.t01	Wine grape	nucleus	69.11	24.57
CDY18933	Canola	plastid	67.48	23.92
KRH65320	Soybean	mitochondrion, nucleus	58.54	20.75
CDX74725	Canola	nucleus	65.85	20.05
AT2G45280.2	Thale cress	nucleus, plastid	60.98	19.38
CDY68195	Canola	cytosol, nucleus, plastid	44.72	18.09
Os01t0578000-01	Rice	cytosol	51.22	18.05
Bra004897.1-P	Field mustard	nucleus	52.03	17.3
GSMUA_Achr5P14000_001	Banana	cytosol	35.77	14.97
Zm00001d044278_P001	Maize	cytosol	33.33	13.95
KXG31586	Sorghum	cytosol	30.08	13.12
TraesCS2D01G214900.1	Wheat	cytosol	30.89	13.1
TraesCS2A01G208200.1	Wheat	cytosol	30.08	12.76
TraesCS2B01G234700.3	Wheat	cytosol	30.89	12.03
Solyc07g017540.2.1	Tomato	cytosol	27.64	9.94
Solyc09g082790.2.1	Tomato	nucleus	25.2	9.28
Solyc07g055170.1.1	Tomato	cytosol	16.26	7.02
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	20.33	6.74
HORVU0Hr1G003380.15	Barley	cytosol	11.38	5.71
Solyc05g050960.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166
GO:GO:0000400	GO:GO:0000707	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005657	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212
GO:GO:0016043	GO:GO:0016787	GO:GO:0033063	GO:GO:0042148	InterPro:IPR020588	UniProt:K4C1C7
InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14	InterPro:RecA_ATP-bd
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g050950.2	EnsemblPlants:Solyc05g050950.2.1	UniParc:UPI000276741F	:	:

Description

No Description!

Coordinates

chr5:+:61174036..61177469

Molecular Weight (calculated)

12939.4 Da

IEP (calculated)

5.891

GRAVY (calculated)

-0.095

Length

123 amino acids

Sequence
(BLAST)

001: MEVSSLPISA SLRAKLISGG YTSISSLFSV SHSDVARDLK ISENQALEIL RVASRRRGSE RSNGTSSIVN GAQSAWEMLN EEKLLGRITT SCSELDDILG
101: GGISCKEVTE IGGVPGIGKT QLG

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.