Factsheet for Bra004897.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74725	Canola	nucleus	100.0	91.58
CDY68195	Canola	cytosol, nucleus, plastid	74.05	90.13
CDY18933	Canola	plastid	83.78	89.34
AT2G45280.2	Thale cress	nucleus, plastid	82.7	79.07
Solyc05g050960.2.1	Tomato	cytosol	44.59	77.46
VIT_15s0048g00380.t01	Wine grape	nucleus	65.14	69.65
KRH65320	Soybean	mitochondrion, nucleus	63.51	67.72
GSMUA_Achr5P14000_001	Banana	cytosol	52.43	65.99
PGSC0003DMT400018063	Potato	nucleus	64.59	65.48
TraesCS2D01G214900.1	Wheat	cytosol	50.81	64.83
KXG31586	Sorghum	cytosol	49.19	64.54
TraesCS2A01G208200.1	Wheat	cytosol	50.27	64.14
Zm00001d044278_P001	Maize	cytosol	49.46	62.24
TraesCS2B01G234700.3	Wheat	cytosol	50.54	59.18
Os01t0578000-01	Rice	cytosol	54.59	57.88
Solyc05g050950.2.1	Tomato	plastid	17.3	52.03
HORVU0Hr1G003380.15	Barley	cytosol	29.19	44.08
Bra001890.1-P	Field mustard	nucleus	8.11	35.71
Bra023796.1-P	Field mustard	nucleus	24.86	27.71
Bra006580.1-P	Field mustard	cytosol	25.14	27.19
Bra002334.1-P	Field mustard	cytosol	25.14	27.19
Bra006820.1-P	Field mustard	mitochondrion	19.73	22.05
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	14.32	20.46
Bra035691.1-P	Field mustard	cytosol	21.08	16.81

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra004897	EnsemblPlants:Bra004897.1	EnsemblPlants:Bra004897.1-P	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0007140	GO:GO:0007141
GO:GO:0007143	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016444	GO:GO:0016787	GO:GO:0045003	GO:GO:0051321	InterPro:IPR020588	UniProt:M4CL11
InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0002547F13	SEG:seg	:

Description

AT2G45280 (E=1e-151) ATRAD51C, RAD51C | ATRAD51C; ATP binding / damaged DNA binding / protein binding / recombinase/ single-stranded DNA binding

Coordinates

chrA05:+:2364883..2367127

Molecular Weight (calculated)

41587.7 Da

IEP (calculated)

7.914

GRAVY (calculated)

-0.267

Length

370 amino acids

Sequence
(BLAST)

001: MVTWTGLEHF RVGRFNPPPP AIEADDFVYD LRPRWPRGEE RGKSPAIEES FHSRRTFMET WRLPLSSSIR GKLISAGYTS LSSISSVSST DLARGARNAW
101: DMLHEEEALP RITTSCSDLD KILGGGISCR DVTEIGGVPG IGKTQIGIQL SVNVQIPREF GGLGGKAIYI DTEGSFMVER ALQIAEACVE DMEEYTGYMH
201: KHFKASQVQM KPRDILENIF YFRVCSYTEQ IALVNHLDKF ISENKDVKVV IVDSITFHFR QDFDDLAQRT RVLSEMALKF MKLAKKFSLA VVLLNQVTTK
301: YTEGSFQLAL ALGDSWSHSC TNRVILYWNG DERYAYIDKS PSLPSASASY TVTGRGLRNS SSSSKRVKMM

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.