Factsheet for Zm00001d044278_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31586	Sorghum	cytosol	90.48	94.33
TraesCS2A01G208200.1	Wheat	cytosol	82.31	83.45
TraesCS2D01G214900.1	Wheat	cytosol	81.63	82.76
TraesCS2B01G234700.3	Wheat	cytosol	81.29	75.63
Os01t0578000-01	Rice	cytosol	82.99	69.91
GSMUA_Achr5P14000_001	Banana	cytosol	67.69	67.69
Solyc05g050960.2.1	Tomato	cytosol	47.62	65.73
CDY68195	Canola	cytosol, nucleus, plastid	63.27	61.18
HORVU0Hr1G003380.15	Barley	cytosol	50.68	60.82
VIT_15s0048g00380.t01	Wine grape	nucleus	68.37	58.09
KRH65320	Soybean	mitochondrion, nucleus	64.63	54.76
CDY18933	Canola	plastid	63.61	53.89
PGSC0003DMT400018063	Potato	nucleus	64.29	51.78
Bra004897.1-P	Field mustard	nucleus	62.24	49.46
AT2G45280.2	Thale cress	nucleus, plastid	63.61	48.32
CDX74725	Canola	nucleus	63.95	46.53
Solyc05g050950.2.1	Tomato	plastid	13.95	33.33
Zm00001d050876_P001	Maize	cytosol	8.16	28.92
Zm00001d021898_P001	Maize	cytosol	27.55	23.82
Zm00001d041757_P001	Maize	cytosol	27.21	23.53
Zm00001d044629_P001	Maize	nucleus	28.23	21.9
Zm00001d035787_P001	Maize	cytosol	12.24	21.82
Zm00001d010986_P001	Maize	vacuole	26.19	21.51
Zm00001d016839_P001	Maize	plastid	20.75	20.96
Zm00001d006656_P001	Maize	cytosol	8.16	19.83
Zm00001d016055_P001	Maize	plastid	15.65	16.73

Protein Annotations

EntrezGene:100284087	MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	UniProt:B6TPY8	EMBL:BT067350	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	EMBL:EU967053	GO:GO:0000003	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0007140
GO:GO:0007141	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003	GO:GO:0051321	InterPro:IPR020588
ProteinID:ONM40633.1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0000034B6D	EnsemblPlantsGene:Zm00001d044278
EnsemblPlants:Zm00001d044278_P001	EnsemblPlants:Zm00001d044278_T001	:	:	:	:

Description

recombination protein51 gene c recombination protein51 gene c

Coordinates

chr3:-:223869824..223874133

Molecular Weight (calculated)

32676.1 Da

IEP (calculated)

7.640

GRAVY (calculated)

-0.232

Length

294 amino acids

Sequence
(BLAST)

001: MGDQSGSRNG PQQKYVSGAQ NAWDMFSDEL SQKHITTGSG DLNDILGGGI HCKEVTEIGG VPGVGKTQLG IQLAINVQIP VECGGLGGKA VYIDTEGSFM
101: VERVYQIAEG CIRDILEHFP HSHEKSSSVQ KQLQPERFLA DIYYFRICSY TEQIAVINYM EKFLREHKDV RIVIIDSVTF HFRQDFEDLA LRTRVLSGLS
201: LKLMKIAKTY NLAVVLLNQV TTKFTEGSFQ LTLALGDSWS HSCTNRLILH WNGNERYAHL DKSPSLPVAS APYAVTGKGI RDAVSSNHKR ARVT

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.