Factsheet for Zm00001d041757_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005140_P003
Zm00001d016055_P001
Zm00001d018151_P003
Zm00001d021898_P001
Zm00001d024953_P024
Zm00001d035787_P001
Zm00001d041757_P001
Zm00001d044629_P001
Zm00001d050876_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	Zm00001d018151_P003	AT3G19210.1	17227544
AT5G20850.1	Zm00001d018151_P003	AT3G19210.1	18430956
AT5G20850.1	Zm00001d016055_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d035787_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d044629_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d050876_P001	AT3G22880.1	15014444
AT5G20850.1	Zm00001d016055_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d035787_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d044629_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d050876_P001	AT3G22880.1	16415210
AT5G20850.1	Zm00001d005140_P003	AT4G29170.1	17937504
AT5G20850.1	Zm00001d024953_P024	AT5G01630.1	15014444
AT5G20850.1	Zm00001d024953_P024	AT5G01630.1	16415210
AT5G20850.1	Zm00001d021898_P001	AT5G20850.1	15014444
AT5G20850.1	Zm00001d041757_P001	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G381300.1	Wheat	cytosol	93.82	93.27
Os12t0497300-01	Rice	cytosol	93.53	93.26
TraesCS7B01G287700.1	Wheat	cytosol	93.53	92.71
TraesCS7A01G384800.1	Wheat	cytosol	93.24	92.42
OQU79150	Sorghum	cytosol	95.0	91.76
Zm00001d021898_P001	Maize	cytosol	91.18	91.18
VIT_11s0016g00340.t01	Wine grape	cytosol	90.0	90.8
Solyc07g017540.2.1	Tomato	cytosol	89.12	88.6
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.53	86.61
Bra006580.1-P	Field mustard	cytosol	87.06	86.55
Bra002334.1-P	Field mustard	cytosol	86.76	86.26
AT5G20850.1	Thale cress	cytosol	86.76	86.26
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	93.24	85.91
CDX92430	Canola	cytosol	80.29	85.58
CDY16571	Canola	cytosol	79.71	84.95
CDX88837	Canola	cytosol	80.88	84.88
CDX70947	Canola	cytosol	80.88	84.88
Zm00001d006656_P001	Maize	cytosol	26.18	73.55
Zm00001d050876_P001	Maize	cytosol	11.47	46.99
Zm00001d044629_P001	Maize	nucleus	50.59	45.38
Zm00001d035787_P001	Maize	cytosol	17.94	36.97
Zm00001d016055_P001	Maize	plastid	28.82	35.64
Zm00001d044278_P001	Maize	cytosol	23.53	27.21
Zm00001d016839_P001	Maize	plastid	22.65	26.46
Zm00001d010986_P001	Maize	vacuole	25.88	24.58

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	EntrezGene:541710	InterPro:AAA+_ATPase	EMBL:AF079429
EMBL:BT061958	UniProt:C0HI02	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx
GO:GO:0000150	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:1990426	InterPro:IPR020587
InterPro:IPR020588	ProteinID:ONM33612.1	InterPro:P-loop_NTPase	PFAM:PF08423	PFAM:PF14520	PIRSF:PIRSF005856
PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	UniProt:Q9XED7	InterPro:Rad51_DMC1_RadA
InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239
UniParc:UPI0000048E63	EnsemblPlantsGene:Zm00001d041757	EnsemblPlants:Zm00001d041757_P001	EnsemblPlants:Zm00001d041757_T001	:	:

Description

recombination protein51 gene b recombination protein51 gene b

Coordinates

chr3:+:136133287..136136626

Molecular Weight (calculated)

36729.1 Da

IEP (calculated)

5.936

GRAVY (calculated)

-0.103

Length

340 amino acids

Sequence
(BLAST)

001: MSSSSAHQKA SPPIEEEATE HGPFPIEQLQ ASGIAALDVK KLKDAGLCTV ESVAYSPRKD LLQIKGISEA KVDKIIEAAS KLVPLGFTSA SQLHAQRLEI
101: IQLTTGSREL DQILDGGIET GSITEMYGEF RSGKTQLCHT LCVTCQLPLD QGGGEGKALY IDAEGTFRPQ RILQIADRFG LNGADVLENV AYARAYNTDH
201: QSRLLLEAAS MMVETRFALM VVDSATALYR TDFSGRGELS ARQMHLAKFL RSLQKLADEF GVAVVITNQV VAQVDGAAMF AGPQIKPIGG NIMAHASTTR
301: LFLRKGRGEE RICKVISSPC LAEAEARFQI SSEGVTDVKD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.