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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER98621
EER99597
EES07568
OQU78622
OQU79150
OQU83843
OQU84696

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G20850.1 EES07568 AT3G19210.1 17227544
AT5G20850.1 EES07568 AT3G19210.1 18430956
AT5G20850.1 OQU78622 AT3G22880.1 15014444
AT5G20850.1 OQU84696 AT3G22880.1 15014444
AT5G20850.1 OQU78622 AT3G22880.1 16415210
AT5G20850.1 OQU84696 AT3G22880.1 16415210
AT5G20850.1 EER98621 AT4G29170.1 17937504
AT5G20850.1 EER99597 AT5G20850.1 15014444
AT5G20850.1 OQU79150 AT5G20850.1 15014444
AT5G20850.1 OQU83843 AT5G20850.1 15014444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d041757_P001 Maize cytosol 91.76 95.0
TraesCS7D01G381300.1 Wheat cytosol 90.91 93.57
TraesCS7A01G384800.1 Wheat cytosol 90.91 93.29
TraesCS7B01G287700.1 Wheat cytosol 90.62 93.0
Os12t0497300-01 Rice cytosol 90.06 92.96
VIT_11s0016g00340.t01 Wine grape cytosol 86.08 89.91
EER99597 Sorghum cytosol 86.93 88.95
Solyc07g017540.2.1 Tomato cytosol 86.08 88.6
OQU83843 Sorghum cytosol 87.78 88.54
HORVU7Hr1G091450.2 Barley cytosol, nucleus 90.34 86.18
GSMUA_Achr10P... Banana cytosol, mitochondrion, nucleus, plastid 27.27 85.71
KRH02540 Soybean cytosol 83.52 85.71
Bra006580.1-P Field mustard cytosol 82.95 85.38
KRH19405 Soybean cytosol 83.24 85.17
AT5G20850.1 Thale cress cytosol 82.39 84.8
Bra002334.1-P Field mustard cytosol 82.39 84.8
CDX92430 Canola cytosol 76.14 84.01
CDX88837 Canola cytosol 76.99 83.64
CDX70947 Canola cytosol 76.99 83.64
CDY16571 Canola cytosol 75.57 83.39
OQU84696 Sorghum nucleus 50.0 51.16
OQU78622 Sorghum nucleus 48.01 50.3
KXG31586 Sorghum cytosol 22.44 28.01
EES18935 Sorghum cytosol, peroxisome, plastid 24.43 23.63
OQU85146 Sorghum plastid 21.31 23.58
Protein Annotations
Gene3D:1.10.150.20MapMan:14.3.2.4Gene3D:3.40.50.300EntrezGene:8064090UniProt:A0A1Z5R603InterPro:AAA+_ATPase
InterPro:DNA_recomb/repair_Rad51InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeInterPro:DNA_repair_Rad51/TF_NusA_a-hlxGO:GO:0000150GO:GO:0000166
GO:GO:0000724GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003690GO:GO:0003697
GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006310GO:GO:0006950
GO:GO:0006974GO:GO:0007049GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016787GO:GO:1990426InterPro:IPR020587InterPro:IPR020588EnsemblPlants:OQU79150
ProteinID:OQU79150ProteinID:OQU79150.1InterPro:P-loop_NTPasePFAM:PF08423PFAM:PF14520PIRSF:PIRSF005856
PFscan:PS50162PFscan:PS50163PANTHER:PTHR22942PANTHER:PTHR22942:SF45InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bd
InterPro:RecA_monomer-monomer_interfaceSMART:SM00382EnsemblPlantsGene:SORBI_3008G101300SUPFAM:SSF47794SUPFAM:SSF52540TIGRFAMs:TIGR02239
UniParc:UPI000B425327SEG:seg::::
Description
hypothetical protein
Coordinates
chr8:-:47986220..47995316
Molecular Weight (calculated)
38070.7 Da
IEP (calculated)
5.470
GRAVY (calculated)
-0.049
Length
352 amino acids
Sequence
(BLAST)
001: MSSTAAAHQK VAAPPTEEEA PEHGPFPIEQ LQASGIAALD VKKLKDAGLC TVESVAYSPR KDLLQIKGIS EAKVDKIIEA ASKLVPLGFT SASQLHAQRL
101: EIIQLTTGSR ELDQILDGGI ETGSITEIYG EFRSGKTQLC HTLCVTCQLP LDQGGGEGKA LYIDAEGTFR PERLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETSVF EVELYVCRFA LMVVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGAA VFAGPQIKPI
301: GGNIMAHAST TRLFLRKGRR EERICKVVSS PCLAEAEARF QISSEGVTDV KD
Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)
001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD
Arabidopsis Description
RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.