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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
EER98621
EER99597
EES07568
OQU78622
OQU79150
OQU83843
OQU84696

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G20850.1 EES07568 AT3G19210.1 17227544
AT5G20850.1 EES07568 AT3G19210.1 18430956
AT5G20850.1 OQU78622 AT3G22880.1 15014444
AT5G20850.1 OQU84696 AT3G22880.1 15014444
AT5G20850.1 OQU78622 AT3G22880.1 16415210
AT5G20850.1 OQU84696 AT3G22880.1 16415210
AT5G20850.1 EER98621 AT4G29170.1 17937504
AT5G20850.1 EER99597 AT5G20850.1 15014444
AT5G20850.1 OQU79150 AT5G20850.1 15014444
AT5G20850.1 OQU83843 AT5G20850.1 15014444
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d021898_P001 Maize cytosol 96.51 97.65
OQU83843 Sorghum cytosol 97.38 95.99
Os11t0615800-01 Rice cytosol 93.31 94.69
VIT_11s0016g00340.t01 Wine grape cytosol 87.5 89.32
Solyc07g017540.2.1 Tomato cytosol 86.92 87.43
OQU79150 Sorghum cytosol 88.95 86.93
KRH19405 Soybean cytosol 86.05 86.05
KRH02540 Soybean cytosol 85.76 86.01
AT5G20850.1 Thale cress cytosol 85.17 85.67
Bra006580.1-P Field mustard cytosol 84.88 85.38
Bra002334.1-P Field mustard cytosol 84.88 85.38
CDX92430 Canola cytosol 78.49 84.64
CDY16571 Canola cytosol 77.91 84.01
GSMUA_Achr10P... Banana cytosol, mitochondrion, nucleus, plastid 27.33 83.93
CDX88837 Canola cytosol 78.78 83.64
CDX70947 Canola cytosol 78.78 83.64
OQU84696 Sorghum nucleus 50.58 50.58
OQU78622 Sorghum nucleus 48.55 49.7
KXG31586 Sorghum cytosol 22.67 27.66
EES18935 Sorghum cytosol, peroxisome, plastid 24.42 23.08
OQU85146 Sorghum plastid 20.93 22.64
Protein Annotations
Gene3D:1.10.150.20MapMan:14.3.2.4Gene3D:3.40.50.300EntrezGene:8057258InterPro:AAA+_ATPaseUniProt:C5XCD8
ncoils:CoilInterPro:DNA_recomb/repair_Rad51InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeInterPro:DNA_repair_Rad51/TF_NusA_a-hlxEnsemblPlants:EER99597
ProteinID:EER99597ProteinID:EER99597.1GO:GO:0000003GO:GO:0000150GO:GO:0000166GO:GO:0000400
GO:GO:0000724GO:GO:0000730GO:GO:0000794GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003690GO:GO:0003697GO:GO:0003824GO:GO:0004518GO:GO:0004520GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006310GO:GO:0006312GO:GO:0006950
GO:GO:0006974GO:GO:0007049GO:GO:0007131GO:GO:0008094GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009628GO:GO:0009987GO:GO:0010212GO:GO:0016043GO:GO:0016787
GO:GO:0042148GO:GO:0070192GO:GO:1990426InterPro:IPR020587InterPro:IPR020588InterPro:P-loop_NTPase
PFAM:PF08423PFAM:PF14520PIRSF:PIRSF005856PFscan:PS50162PFscan:PS50163PANTHER:PTHR22942
PANTHER:PTHR22942:SF45InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bdInterPro:RecA_monomer-monomer_interfaceSMART:SM00382EnsemblPlantsGene:SORBI_3002G351100
SUPFAM:SSF47794SUPFAM:SSF52540TIGRFAMs:TIGR02239UniParc:UPI0001A83BB7RefSeq:XP_002463076.1SEG:seg
Description
hypothetical protein
Coordinates
chr2:-:71505726..71509816
Molecular Weight (calculated)
36982.4 Da
IEP (calculated)
6.181
GRAVY (calculated)
-0.100
Length
344 amino acids
Sequence
(BLAST)
001: MSAAQQQKAA ASTSAAGAEQ EEVEHGPFPI EQLQASGIAA LDVKKLKDSG LHTVEAVAYT PRKDLVQIKG ISEAKVDKII EAASKIVPLG FTSASQLHAQ
101: RLEIIQVTTG SRELDKILEG GIETGSITEI YGEFRSGKTQ LCHTLCVTCQ LPLDQGGGEG KALYIDAEGT FRPQRLLQIA DRFGLNGADV LENVAYARAY
201: NTDHQSRLLL EAASMMIETR FALMVVDSAT ALYRTDFSGR GELSARQMHM AKFLRSLQKL ADEFGVAVVI TNQVVAQVDG SAMFAGPQFK PIGGNIMAHA
301: STTRLALRKG RGEERICKVI SSPCLAEAEA RFQLASEGVA DVKD
Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)
001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD
Arabidopsis Description
RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.