Factsheet for AT5G20850.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006580.1-P	Field mustard	cytosol	99.12	99.12
Bra002334.1-P	Field mustard	cytosol	97.95	97.95
CDX70947	Canola	cytosol	92.11	97.22
CDX88837	Canola	cytosol	92.11	97.22
CDX92430	Canola	cytosol	90.64	97.18
CDY16571	Canola	cytosol	90.06	96.55
VIT_11s0016g00340.t01	Wine grape	cytosol	88.89	90.21
Solyc07g017540.2.1	Tomato	cytosol	88.89	88.89
KRH19405	Soybean	cytosol	88.01	87.5
KRH02540	Soybean	cytosol	87.72	87.46
Os11t0615800-01	Rice	cytosol	86.55	87.32
Zm00001d041757_P001	Maize	cytosol	86.26	86.76
TraesCS7D01G381300.1	Wheat	cytosol	86.26	86.26
Zm00001d021898_P001	Maize	cytosol	85.38	85.88
TraesCS7A01G384800.1	Wheat	cytosol	85.96	85.71
TraesCS7B01G287700.1	Wheat	cytosol	85.67	85.42
Os12t0497300-01	Rice	cytosol	85.09	85.34
EER99597	Sorghum	cytosol	85.67	85.17
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	27.78	84.82
OQU83843	Sorghum	cytosol	85.67	83.95
OQU79150	Sorghum	cytosol	84.8	82.39
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	85.09	78.86
AT3G22880.1	Thale cress	nucleus	50.29	50.0
AT5G57450.2	Thale cress	nucleus	21.93	24.67
AT2G45280.2	Thale cress	nucleus, plastid	27.19	24.03
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	23.1	21.29

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	EntrezGene:832208	UniProt:A0A178UQK2	InterPro:AAA+_ATPase
ProteinID:AAC49555.1	ProteinID:AED92897.1	EMBL:AF296834	ArrayExpress:AT5G20850	EnsemblPlantsGene:AT5G20850	RefSeq:AT5G20850
TAIR:AT5G20850	RefSeq:AT5G20850-TAIR-G	EnsemblPlants:AT5G20850.1	TAIR:AT5G20850.1	Symbol:ATRAD51	Unigene:At.110
ProteinID:CAA04529.1	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003
GO:GO:0000150	GO:GO:0000166	GO:GO:0000400	GO:GO:0000724	GO:GO:0000730	GO:GO:0000794
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824
GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006310	GO:GO:0006312	GO:GO:0006355
GO:GO:0006950	GO:GO:0006974	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009314	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332
GO:GO:0016043	GO:GO:0016787	GO:GO:0042148	GO:GO:0045003	GO:GO:0070192	GO:GO:1990426
InterPro:IPR020587	InterPro:IPR020588	RefSeq:NP_568402.1	ProteinID:OAO95923.1	InterPro:P-loop_NTPase	UniProt:P94102
PFAM:PF08423	PIRSF:PIRSF005856	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001078
PO:PO:0001081	PO:PO:0004507	PO:PO:0007006	PO:PO:0007017	PO:PO:0007611	PO:PO:0007616
PO:PO:0009005	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009046	PO:PO:0009052
PO:PO:0020100	PO:PO:0025022	PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540
TIGRFAMs:TIGR02239	EMBL:U43528	UniParc:UPI0000034C3E	:	:	:

Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]

Coordinates

chr5:-:7070491..7072966

Molecular Weight (calculated)

37306.7 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.219

Length

342 amino acids

Sequence
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.