Factsheet for AT3G22880.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023796.1-P	Field mustard	nucleus	88.08	91.27
CDY46610	Canola	nucleus	88.08	91.27
KRH35438	Soybean	nucleus	89.24	88.99
VIT_05s0020g04170.t01	Wine grape	nucleus	89.83	88.79
Solyc09g082790.2.1	Tomato	nucleus	84.59	87.13
PGSC0003DMT400077570	Potato	nucleus	82.27	82.99
Os11t0146800-01	Rice	nucleus	81.98	81.98
OQU84696	Sorghum	nucleus	81.69	81.69
TraesCS5D01G141200.1	Wheat	nucleus	81.4	81.4
Os12t0143800-01	Rice	mitochondrion	81.1	81.1
TraesCS5B01G131900.1	Wheat	nucleus	80.81	80.81
OQU78622	Sorghum	nucleus	78.49	80.36
CDY34225	Canola	mitochondrion	87.79	80.11
HORVU5Hr1G040730.2	Barley	nucleus	79.36	78.9
TraesCS5A01G133000.1	Wheat	nucleus	78.78	78.32
GSMUA_Achr8P26880_001	Banana	nucleus	84.01	74.87
KRG91377	Soybean	cytosol	31.1	73.79
Zm00001d050876_P001	Maize	cytosol	17.44	72.29
Zm00001d044629_P001	Maize	nucleus	79.36	72.03
Zm00001d035787_P001	Maize	cytosol	28.2	58.79
Zm00001d016055_P001	Maize	plastid	43.6	54.55
AT5G20850.1	Thale cress	cytosol	50.0	50.29
AT2G45280.2	Thale cress	nucleus, plastid	28.49	25.32
AT5G57450.2	Thale cress	nucleus	18.9	21.38
AT2G28560.1	Thale cress	cytosol, nucleus, plastid	22.38	20.75

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	EntrezGene:821860	UniProt:A0A178VEK4	InterPro:AAA+_ATPase
ProteinID:AAC49617.1	ProteinID:AEE76687.1	ArrayExpress:AT3G22880	EnsemblPlantsGene:AT3G22880	RefSeq:AT3G22880	TAIR:AT3G22880
RefSeq:AT3G22880-TAIR-G	EnsemblPlants:AT3G22880.1	TAIR:AT3G22880.1	Symbol:ATDMC1	Unigene:At.50216	ProteinID:BAA08255.1
ProteinID:BAB03033.1	EMBL:BT023447	ncoils:Coil	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like
InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400	GO:GO:0000730
GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697
GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212
GO:GO:0016043	GO:GO:0016787	GO:GO:0042148	GO:GO:0051026	GO:GO:0051321	InterPro:IPR020587
InterPro:IPR020588	RefSeq:NP_188928.2	ProteinID:OAP03373.1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856
PO:PO:0000008	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0000431
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020047	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30
UniProt:Q39009	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382	SUPFAM:SSF47794
SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI0000030742	:	:	:

Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]

Coordinates

chr3:-:8097678..8100932

Molecular Weight (calculated)

37515.4 Da

IEP (calculated)

5.491

GRAVY (calculated)

-0.153

Length

344 amino acids

Sequence
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.