CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91377
KRG95451
KRG97420
KRH02540
KRH17731
KRH19405
KRH31480
KRH31957
KRH35438
KRH67127
KRH71497
KRH74183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	KRG97420	AT1G67370.1	17937504
AT3G22880.1	KRH31480	AT1G67370.1	17937504
AT3G22880.1	KRG91377	AT3G22880.1	15014444
AT3G22880.1	KRH35438	AT3G22880.1	15014444
AT3G22880.1	KRG95451	AT3G29350.1	17937504
AT3G22880.1	KRH31957	AT3G29350.1	17937504
AT3G22880.1	KRH67127	AT3G29350.1	17937504
AT3G22880.1	KRH71497	AT3G29350.1	17937504
AT3G22880.1	KRH74183	AT4G29170.1	17937504
AT3G22880.1	KRH17731	AT5G01630.1	15014444
AT3G22880.1	KRH17731	AT5G01630.1	16415210
AT3G22880.1	KRH02540	AT5G20850.1	15014444
AT3G22880.1	KRH19405	AT5G20850.1	15014444
AT3G22880.1	KRH02540	AT5G20850.1	16415210
AT3G22880.1	KRH19405	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35438	Soybean	nucleus	84.83	35.65
VIT_05s0020g04170.t01	Wine grape	nucleus	84.14	35.06
Zm00001d035787_P001	Maize	cytosol	37.24	32.73
Solyc09g082790.2.1	Tomato	nucleus	75.17	32.63
OQU84696	Sorghum	nucleus	74.48	31.4
Bra023796.1-P	Field mustard	nucleus	71.72	31.33
CDY46610	Canola	nucleus	71.72	31.33
AT3G22880.1	Thale cress	nucleus	73.79	31.1
TraesCS5B01G131900.1	Wheat	nucleus	73.1	30.81
Os12t0143800-01	Rice	mitochondrion	73.1	30.81
Os11t0146800-01	Rice	nucleus	73.1	30.81
TraesCS5D01G141200.1	Wheat	nucleus	72.41	30.52
OQU78622	Sorghum	nucleus	68.28	29.46
PGSC0003DMT400077570	Potato	nucleus	68.28	29.03
HORVU5Hr1G040730.2	Barley	nucleus	68.28	28.61
TraesCS5A01G133000.1	Wheat	nucleus	68.28	28.61
GSMUA_Achr8P26880_001	Banana	nucleus	75.17	28.24
CDY34225	Canola	mitochondrion	71.72	27.59
Zm00001d044629_P001	Maize	nucleus	71.72	27.44
KRH02540	Soybean	cytosol	42.07	17.78
KRH19405	Soybean	cytosol	42.07	17.73
Zm00001d050876_P001	Maize	cytosol	8.97	15.66
Zm00001d016055_P001	Maize	plastid	29.66	15.64
CDX92963	Canola	nucleus	7.59	13.1
Bra001890.1-P	Field mustard	nucleus	7.59	13.1
KRH65320	Soybean	mitochondrion, nucleus	21.38	8.93
KRH10360	Soybean	mitochondrion, nucleus, plastid	20.0	7.67
KRH01614	Soybean	nucleus	14.48	7.29

Protein Annotations

Gene3D:1.10.150.20	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02012679	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx
EnsemblPlantsGene:GLYMA_20G151000	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400	GO:GO:0000730
GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697
GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259
GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787
GO:GO:0042148	GO:GO:0070192	InterPro:IPR020587	UniProt:K7N3K1	EnsemblPlants:KRG91377	ProteinID:KRG91377
ProteinID:KRG91377.1	PFAM:PF08423	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:RecA_monomer-monomer_interface
SUPFAM:SSF47794	UniParc:UPI0002954553	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:38970744..38972473

Molecular Weight (calculated)

15680.4 Da

IEP (calculated)

8.926

GRAVY (calculated)

0.159

Length

145 amino acids

Sequence
(BLAST)

001: MKLQDAGIYT CNGLMMHTKK NLTGIKGLSE VKVDKICEAA EKIVNFGYIT GSDALLKVRC LLFISDPGGG VFVTDPKKPA GGHVLVHAAT VRLMFRKGKG
101: EQRICRVFDA PNLPEAEAIS FYLINSMLVS YVFQITAGGI ADAKD

Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.