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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001890.1-P Field mustard nucleus 100.0 100.0
Zm00001d016055_P001 Maize plastid 76.19 23.27
CDY46610 Canola nucleus 80.95 20.48
Solyc09g082790.2.1 Tomato nucleus 76.19 19.16
OQU78622 Sorghum nucleus 75.0 18.75
KRH35438 Soybean nucleus 76.19 18.55
PGSC0003DMT400077570 Potato nucleus 75.0 18.48
Os11t0146800-01 Rice nucleus 75.0 18.31
OQU84696 Sorghum nucleus 75.0 18.31
TraesCS5A01G133000.1 Wheat nucleus 75.0 18.21
HORVU5Hr1G040730.2 Barley nucleus 75.0 18.21
VIT_05s0020g04170.t01 Wine grape nucleus 75.0 18.1
CDY34225 Canola mitochondrion 80.95 18.04
TraesCS5B01G131900.1 Wheat nucleus 73.81 18.02
TraesCS5D01G141200.1 Wheat nucleus 73.81 18.02
Os12t0143800-01 Rice mitochondrion 72.62 17.73
Zm00001d044629_P001 Maize nucleus 75.0 16.62
GSMUA_Achr8P26880_001 Banana nucleus 71.43 15.54
CDX92430 Canola cytosol 46.43 12.23
CDX88837 Canola cytosol 46.43 12.04
CDX70947 Canola cytosol 46.43 12.04
CDY16571 Canola cytosol 45.24 11.91
CDY68195 Canola cytosol, nucleus, plastid 35.71 9.87
CDY18933 Canola plastid 35.71 8.65
KRG91377 Soybean cytosol 13.1 7.59
CDX74725 Canola nucleus 35.71 7.43
CDX88622 Canola cytosol, mitochondrion, nucleus, plastid 26.19 7.19
CDY53383 Canola cytosol 25.0 4.58
CDX77188 Canola cytosol 25.0 4.58
CDY11869 Canola cytosol 10.71 3.91
Zm00001d050876_P001 Maize cytosol 1.19 1.2
Zm00001d035787_P001 Maize cytosol 1.19 0.61
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078E053EnsemblPlants:CDX92963ProteinID:CDX92963ProteinID:CDX92963.1
InterPro:DNA_recomb/repair_Rad51_CGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824
GO:GO:0005488GO:GO:0005524GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006950
GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00154835001
InterPro:IPR020588InterPro:P-loop_NTPasePFAM:PF08423PFscan:PS50162PANTHER:PTHR22942PANTHER:PTHR22942:SF30
InterPro:RecA_ATP-bdSUPFAM:SSF52540UniParc:UPI0002540736:::
Description
BnaA03g36850D
Coordinates
chrLK031874:-:288711..289325
Molecular Weight (calculated)
8831.8 Da
IEP (calculated)
9.741
GRAVY (calculated)
-0.026
Length
84 amino acids
Sequence
(BLAST)
1: MTGSDALLKR KSVVRITTGC QALDDLLGAI TEASGGFRSG KTQLAHTLCV TTQAGFFPKV LLPKNMKGGN GKVAYIDTEG TLYP
Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)
001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF
Arabidopsis Description
DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.