Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra001890.1-P | Field mustard | nucleus | 100.0 | 100.0 |
Zm00001d016055_P001 | Maize | plastid | 76.19 | 23.27 |
CDY46610 | Canola | nucleus | 80.95 | 20.48 |
Solyc09g082790.2.1 | Tomato | nucleus | 76.19 | 19.16 |
OQU78622 | Sorghum | nucleus | 75.0 | 18.75 |
KRH35438 | Soybean | nucleus | 76.19 | 18.55 |
PGSC0003DMT400077570 | Potato | nucleus | 75.0 | 18.48 |
Os11t0146800-01 | Rice | nucleus | 75.0 | 18.31 |
OQU84696 | Sorghum | nucleus | 75.0 | 18.31 |
TraesCS5A01G133000.1 | Wheat | nucleus | 75.0 | 18.21 |
HORVU5Hr1G040730.2 | Barley | nucleus | 75.0 | 18.21 |
VIT_05s0020g04170.t01 | Wine grape | nucleus | 75.0 | 18.1 |
CDY34225 | Canola | mitochondrion | 80.95 | 18.04 |
TraesCS5B01G131900.1 | Wheat | nucleus | 73.81 | 18.02 |
TraesCS5D01G141200.1 | Wheat | nucleus | 73.81 | 18.02 |
Os12t0143800-01 | Rice | mitochondrion | 72.62 | 17.73 |
Zm00001d044629_P001 | Maize | nucleus | 75.0 | 16.62 |
GSMUA_Achr8P26880_001 | Banana | nucleus | 71.43 | 15.54 |
CDX92430 | Canola | cytosol | 46.43 | 12.23 |
CDX88837 | Canola | cytosol | 46.43 | 12.04 |
CDX70947 | Canola | cytosol | 46.43 | 12.04 |
CDY16571 | Canola | cytosol | 45.24 | 11.91 |
CDY68195 | Canola | cytosol, nucleus, plastid | 35.71 | 9.87 |
CDY18933 | Canola | plastid | 35.71 | 8.65 |
KRG91377 | Soybean | cytosol | 13.1 | 7.59 |
CDX74725 | Canola | nucleus | 35.71 | 7.43 |
CDX88622 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.19 | 7.19 |
CDY53383 | Canola | cytosol | 25.0 | 4.58 |
CDX77188 | Canola | cytosol | 25.0 | 4.58 |
CDY11869 | Canola | cytosol | 10.71 | 3.91 |
Zm00001d050876_P001 | Maize | cytosol | 1.19 | 1.2 |
Zm00001d035787_P001 | Maize | cytosol | 1.19 | 0.61 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078E053 | EnsemblPlants:CDX92963 | ProteinID:CDX92963 | ProteinID:CDX92963.1 |
InterPro:DNA_recomb/repair_Rad51_C | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
GO:GO:0008094 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00154835001 |
InterPro:IPR020588 | InterPro:P-loop_NTPase | PFAM:PF08423 | PFscan:PS50162 | PANTHER:PTHR22942 | PANTHER:PTHR22942:SF30 |
InterPro:RecA_ATP-bd | SUPFAM:SSF52540 | UniParc:UPI0002540736 | : | : | : |
Description
BnaA03g36850D
Coordinates
chrLK031874:-:288711..289325
Molecular Weight (calculated)
8831.8 Da
IEP (calculated)
9.741
GRAVY (calculated)
-0.026
Length
84 amino acids
Sequence
(BLAST)
(BLAST)
1: MTGSDALLKR KSVVRITTGC QALDDLLGAI TEASGGFRSG KTQLAHTLCV TTQAGFFPKV LLPKNMKGGN GKVAYIDTEG TLYP
001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF
Arabidopsis Description
DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.