CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18933	Canola	plastid	100.0	87.61
Solyc05g050960.2.1	Tomato	cytosol	53.95	77.0
CDX74725	Canola	nucleus	98.68	74.26
Bra004897.1-P	Field mustard	nucleus	90.13	74.05
AT2G45280.2	Thale cress	nucleus, plastid	91.45	71.83
KRH65320	Soybean	mitochondrion, nucleus	74.01	64.84
TraesCS2D01G214900.1	Wheat	cytosol	61.84	64.83
VIT_15s0048g00380.t01	Wine grape	nucleus	73.36	64.45
GSMUA_Achr5P14000_001	Banana	cytosol	62.17	64.29
KXG31586	Sorghum	cytosol	59.54	64.18
TraesCS2A01G208200.1	Wheat	cytosol	61.18	64.14
Zm00001d044278_P001	Maize	cytosol	61.18	63.27
PGSC0003DMT400018063	Potato	nucleus	75.0	62.47
TraesCS2B01G234700.3	Wheat	cytosol	61.51	59.18
Os01t0578000-01	Rice	cytosol	64.47	56.16
Solyc05g050950.2.1	Tomato	plastid	18.09	44.72
HORVU0Hr1G003380.15	Barley	cytosol	35.2	43.67
CDX92963	Canola	nucleus	9.87	35.71
CDY46610	Canola	nucleus	28.62	26.2
CDY16571	Canola	cytosol	26.97	25.71
CDX92430	Canola	cytosol	26.97	25.71
CDX88837	Canola	cytosol	26.97	25.31
CDX70947	Canola	cytosol	26.97	25.31
CDY34225	Canola	mitochondrion	28.62	23.08
CDY11869	Canola	cytosol	15.79	20.87
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	20.39	20.26
CDY53383	Canola	cytosol	24.67	16.34
CDX77188	Canola	cytosol	24.67	16.34

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	GO:A0A078JP02	UniProt:A0A078JP02	EnsemblPlants:CDY68195	ProteinID:CDY68195
ProteinID:CDY68195.1	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0007140	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003	GO:GO:0051321	EnsemblPlantsGene:GSBRNA2T00070066001
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0004EE2516	SEG:seg

Description

BnaAnng26450DBnaAnng26450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP02]

Coordinates

chrLK036968:+:3..1602

Molecular Weight (calculated)

33797.5 Da

IEP (calculated)

7.420

GRAVY (calculated)

-0.181

Length

304 amino acids

Sequence
(BLAST)

001: SEAFEILKMA NQISGSSSCN GRSSSLVNGA RNAWDMLNEE EALPRITTSC SDLDKILGGG ISCRDVTEIG GVPGIGKTQI GIQLSVNVQI PREFGGLGGK
101: AIYIDTEGSF MVERALQIAQ ACVEDMEEYT GYMHKHFKAS QVQMKPRDIL ENIFYFRVCS YTEQIALVNH LDKFISENKD VKVVIVDSIT FHFRQDFDDL
201: AQRTRVLSEM ALKFMKLAKK FSLAVVLLNQ VTTKYTEGSF QLALALGDSW SHSCTNRVIL YWNGDERYAY IDKSPSLPSA SASYTVTGRG LRNSSSSSKR
301: VKMM

Best Arabidopsis Sequence Match ( AT2G45280.2 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARGK FLLYPNLRRL ESVARFSLIS TDNANITEEE AFEILKLANQ
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.