CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044278_P001	Maize	cytosol	94.33	90.48
TraesCS2D01G214900.1	Wheat	cytosol	86.88	84.48
TraesCS2A01G208200.1	Wheat	cytosol	86.88	84.48
TraesCS2B01G234700.3	Wheat	cytosol	86.52	77.22
Os01t0578000-01	Rice	cytosol	86.17	69.63
GSMUA_Achr5P14000_001	Banana	cytosol	71.28	68.37
Solyc05g050960.2.1	Tomato	cytosol	49.65	65.73
HORVU0Hr1G003380.15	Barley	cytosol	53.9	62.04
CDY68195	Canola	cytosol, nucleus, plastid	64.18	59.54
VIT_15s0048g00380.t01	Wine grape	nucleus	70.92	57.8
KRH65320	Soybean	mitochondrion, nucleus	67.02	54.47
CDY18933	Canola	plastid	64.18	52.16
PGSC0003DMT400018063	Potato	nucleus	65.6	50.68
Bra004897.1-P	Field mustard	nucleus	64.54	49.19
AT2G45280.2	Thale cress	nucleus, plastid	64.89	47.29
CDX74725	Canola	nucleus	64.54	45.05
Solyc05g050950.2.1	Tomato	plastid	13.12	30.08
OQU84696	Sorghum	nucleus	31.56	25.87
OQU78622	Sorghum	nucleus	29.79	25.0
EER99597	Sorghum	cytosol	27.66	22.67
OQU79150	Sorghum	cytosol	28.01	22.44
OQU83843	Sorghum	cytosol	27.66	22.35
EES18935	Sorghum	cytosol, peroxisome, plastid	26.6	20.6
OQU85146	Sorghum	plastid	21.63	19.18

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	UniProt:A0A1B6Q0Y2	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0007140	GO:GO:0007141	GO:GO:0007143	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787
GO:GO:0045003	GO:GO:0051321	InterPro:IPR020588	EnsemblPlants:KXG31586	ProteinID:KXG31586	ProteinID:KXG31586.1
InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14
InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	EnsemblPlantsGene:SORBI_3003G023200	SUPFAM:SSF52540	UniParc:UPI0001C80B0C	:

Description

hypothetical protein

Coordinates

chr3:+:1995819..2000069

Molecular Weight (calculated)

31224.4 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.165

Length

282 amino acids

Sequence
(BLAST)

001: MAEQSGAQNA WDMLSDEQSQ KHITTGAGDL NDILGGGIHC KEVTEIGGVP GVGKTQLGIQ LAINVQIPVE YGGLGGKAVY IDTEGSFMVE RVYQIAEGCI
101: RDILEHFPHS HEKSSSGKKQ LQPEHFLADI YYFRICSYTE QIAVINYLEK FLGEHKDVRI VIIDSVTFHF RQDFEDLALR TRVLSGLSLK LMKIAKTYNL
201: AVVLLNQVTT KFTEGSFQLT LALGDSWSHS CTNRLILYWN GNERCAHLDK SPSLPVASAP YAVTGKGIRD AVSPNHKRAR VT

Best Arabidopsis Sequence Match ( AT2G45280.2 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARGK FLLYPNLRRL ESVARFSLIS TDNANITEEE AFEILKLANQ
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.