Factsheet for TraesCS2A01G208200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G214900.1	Wheat	cytosol	98.62	98.62
TraesCS2B01G234700.3	Wheat	cytosol	98.62	90.51
KXG31586	Sorghum	cytosol	84.48	86.88
Zm00001d044278_P001	Maize	cytosol	83.45	82.31
Os01t0578000-01	Rice	cytosol	85.17	70.77
GSMUA_Achr5P14000_001	Banana	cytosol	70.34	69.39
Solyc05g050960.2.1	Tomato	cytosol	49.31	67.14
HORVU0Hr1G003380.15	Barley	cytosol	54.83	64.9
CDY68195	Canola	cytosol, nucleus, plastid	64.14	61.18
VIT_15s0048g00380.t01	Wine grape	nucleus	69.66	58.38
KRH65320	Soybean	mitochondrion, nucleus	65.52	54.76
CDY18933	Canola	plastid	64.14	53.6
PGSC0003DMT400018063	Potato	nucleus	64.83	51.51
Bra004897.1-P	Field mustard	nucleus	64.14	50.27
AT2G45280.2	Thale cress	nucleus, plastid	65.52	49.1
CDX74725	Canola	nucleus	64.48	46.29
Solyc05g050950.2.1	Tomato	plastid	12.76	30.08
TraesCS5A01G133000.1	Wheat	nucleus	30.69	25.72
TraesCS7A01G384800.1	Wheat	cytosol	28.28	23.91
TraesCS1A01G058500.1	Wheat	cytosol, nucleus, plastid	25.86	20.49
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	20.0	19.02

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0007140	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003	GO:GO:0051321
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2A01G208200	EnsemblPlants:TraesCS2A01G208200.1
TIGR:cd01123	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:189018988..189035385

Molecular Weight (calculated)

32075.5 Da

IEP (calculated)

7.135

GRAVY (calculated)

-0.104

Length

290 amino acids

Sequence
(BLAST)

001: MAPNETAQKL LLQGAQNAWD MLSQEQSQKH ITTGSGDLNG ILGGGIHCKE VTEIGGVPGI GKTQLGIQLA INVQIPVDYG GLGGKAIYID TEGSFMVERV
101: YQIAEGCISD IMEYFPCHHD KSSSGQENLQ PESFLAGIYY FRICSYTEQI AVINYLEKFL REHKDVRIVI IDSVTFHFRQ DFDDLALRTR VLSGLSLKLM
201: KISKSYNLAV VLLNQVTTKF TEGSFQLTLA LGDSWSHSCT NRLILYWKGN ERCAYLDKSP SLPVASTPYA VTSKGVRDAG SSSCKRVRVM

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.