Factsheet for TraesCS2B01G234700.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G214900.1	Wheat	cytosol	91.14	99.31
TraesCS2A01G208200.1	Wheat	cytosol	90.51	98.62
KXG31586	Sorghum	cytosol	77.22	86.52
Zm00001d044278_P001	Maize	cytosol	75.63	81.29
Os01t0578000-01	Rice	cytosol	78.48	71.06
GSMUA_Achr5P14000_001	Banana	cytosol	64.56	69.39
Solyc05g050960.2.1	Tomato	cytosol	45.25	67.14
HORVU0Hr1G003380.15	Barley	cytosol	50.95	65.71
CDY68195	Canola	cytosol, nucleus, plastid	59.18	61.51
VIT_15s0048g00380.t01	Wine grape	nucleus	64.24	58.67
KRH65320	Soybean	mitochondrion, nucleus	60.13	54.76
CDY18933	Canola	plastid	59.18	53.89
PGSC0003DMT400018063	Potato	nucleus	59.81	51.78
Bra004897.1-P	Field mustard	nucleus	59.18	50.54
AT2G45280.2	Thale cress	nucleus, plastid	60.44	49.35
CDX74725	Canola	nucleus	59.49	46.53
Solyc05g050950.2.1	Tomato	plastid	12.03	30.89
TraesCS5B01G131900.1	Wheat	nucleus	27.85	25.58
TraesCS7B01G287700.1	Wheat	cytosol	25.63	23.62
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	18.35	20.42
TraesCS1B01G075900.1	Wheat	cytosol, peroxisome, plastid	23.42	20.05

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000003	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0007049
GO:GO:0007131	GO:GO:0007140	GO:GO:0007143	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0016787	GO:GO:0045003	GO:GO:0051321
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2B01G234700	EnsemblPlants:TraesCS2B01G234700.3
TIGR:cd01123	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:233546227..233554430

Molecular Weight (calculated)

34983.1 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.134

Length

316 amino acids

Sequence
(BLAST)

001: MAPNETAQKL LLQGAQNAWD MLSEEQSQKH ITTGSGDLNG ILGGGIHCKE VTEIGGVPGI GKTQLGIQLA INVQIPVDYG GLGGKAIYID TEGSFMVERV
101: YQIAEGCISD IMEYFPCHHD KSSSGQENLQ PESFLAGIYY FRICSYTEQI AVINYLEKFL GEHKDVRIVI IDSVTFHFRQ DFDDLALRTR VLSGLSLKLM
201: KLSKSYNLAV VLLNQVTTKF TEGSFQLTLA LVTASRQHLR RGWMLARKIS SPSRIADSDS WSHSCTNRLI LYWKGNERCA YLDKSPSLPV ASTPYAVTSK
301: GVRDAGSSSC KRVRVM

Best Arabidopsis Sequence Match ( AT2G45280.2 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARGK FLLYPNLRRL ESVARFSLIS TDNANITEEE AFEILKLANQ
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.