Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68195 | Canola | cytosol, nucleus, plastid | 71.83 | 91.45 |
| CDY18933 | Canola | plastid | 80.62 | 89.91 |
| Bra004897.1-P | Field mustard | nucleus | 79.07 | 82.7 |
| CDX74725 | Canola | nucleus | 83.98 | 80.45 |
| Solyc05g050960.2.1 | Tomato | cytosol | 42.12 | 76.53 |
| VIT_15s0048g00380.t01 | Wine grape | nucleus | 64.08 | 71.68 |
| KRH65320 | Soybean | mitochondrion, nucleus | 63.57 | 70.89 |
| PGSC0003DMT400018063 | Potato | nucleus | 65.12 | 69.04 |
| GSMUA_Achr5P14000_001 | Banana | cytosol | 50.39 | 66.33 |
| TraesCS2D01G214900.1 | Wheat | cytosol | 49.61 | 66.21 |
| TraesCS2A01G208200.1 | Wheat | cytosol | 49.1 | 65.52 |
| KXG31586 | Sorghum | cytosol | 47.29 | 64.89 |
| Zm00001d044278_P001 | Maize | cytosol | 48.32 | 63.61 |
| Os01t0578000-01 | Rice | cytosol | 55.04 | 61.03 |
| Solyc05g050950.2.1 | Tomato | plastid | 19.38 | 60.98 |
| TraesCS2B01G234700.3 | Wheat | cytosol | 49.35 | 60.44 |
| HORVU0Hr1G003380.15 | Barley | cytosol | 28.17 | 44.49 |
| AT3G22880.1 | Thale cress | nucleus | 25.32 | 28.49 |
| AT5G20850.1 | Thale cress | cytosol | 24.03 | 27.19 |
| AT5G57450.2 | Thale cress | nucleus | 19.12 | 24.34 |
| AT2G28560.1 | Thale cress | cytosol, nucleus, plastid | 20.67 | 21.56 |
Protein Annotations
| MapMan:13.3.6.4.3.1 | Gene3D:3.40.50.300 | EntrezGene:819136 | ProteinID:AEC10534.1 | ArrayExpress:AT2G45280 | EnsemblPlantsGene:AT2G45280 |
| RefSeq:AT2G45280 | TAIR:AT2G45280 | RefSeq:AT2G45280-TAIR-G | EnsemblPlants:AT2G45280.2 | TAIR:AT2G45280.2 | Symbol:ATRAD51C |
| InterPro:DNA_recomb/repair_Rad51_C | InterPro:DNA_recomb/repair_RecA-like | UniProt:F4IW45 | GO:GO:0000003 | GO:GO:0000150 | GO:GO:0000166 |
| GO:GO:0000724 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0007049 | GO:GO:0007131 | GO:GO:0007140 | GO:GO:0007141 | GO:GO:0007143 | GO:GO:0008094 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016444 | GO:GO:0016787 |
| GO:GO:0045003 | GO:GO:0051321 | InterPro:IPR020588 | RefSeq:NP_001189749.1 | InterPro:P-loop_NTPase | PFAM:PF08423 |
| PIRSF:PIRSF005856 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50162 | PANTHER:PTHR22942 | PANTHER:PTHR22942:SF14 |
| Symbol:RAD51C | InterPro:Rad51_DMC1_RadA | InterPro:RecA_ATP-bd | SUPFAM:SSF52540 | UniParc:UPI0001E92CF8 | SEG:seg |
Description
ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
Coordinates
chr2:+:18670009..18672135
Molecular Weight (calculated)
42994.5 Da
IEP (calculated)
6.768
GRAVY (calculated)
-0.137
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARGK FLLYPNLRRL ESVARFSLIS TDNANITEEE AFEILKLANQ
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM
101: SCCNGSRSLI NGAKNAWDML HEEESLPRIT TSCSDLDNIL GGGISCRDVT EIGGVPGIGK TQIGIQLSVN VQIPRECGGL GGKAIYIDTE GSFMVERALQ
201: IAEACVEDME EYTGYMHKHF QANQVQMKPE DILENIFYFR VCSYTEQIAL VNHLEKFISE NKDVKVVIVD SITFHFRQDY DDLAQRTRVL SEMALKFMKL
301: AKKFSLAVVL LNQVTTKFSE GSFQLALALG DSWSHSCTNR VILYWNGDER YAYIDKSPSL PSASASYTVT SRGLRNSSSS SKRVKMM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.