Factsheet for Solyc05g050960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018063	Potato	nucleus	98.59	57.53
CDY68195	Canola	cytosol, nucleus, plastid	77.0	53.95
GSMUA_Achr5P14000_001	Banana	cytosol	68.54	49.66
TraesCS2D01G214900.1	Wheat	cytosol	67.61	49.66
KXG31586	Sorghum	cytosol	65.73	49.65
TraesCS2A01G208200.1	Wheat	cytosol	67.14	49.31
VIT_15s0048g00380.t01	Wine grape	nucleus	79.81	49.13
Zm00001d044278_P001	Maize	cytosol	65.73	47.62
CDY18933	Canola	plastid	77.0	47.26
KRH65320	Soybean	mitochondrion, nucleus	75.12	46.11
TraesCS2B01G234700.3	Wheat	cytosol	67.14	45.25
Bra004897.1-P	Field mustard	nucleus	77.46	44.59
AT2G45280.2	Thale cress	nucleus, plastid	76.53	42.12
Os01t0578000-01	Rice	cytosol	68.08	41.55
CDX74725	Canola	nucleus	77.46	40.84
HORVU0Hr1G003380.15	Barley	cytosol	45.54	39.59
Solyc07g017540.2.1	Tomato	cytosol	26.76	16.67
Solyc09g082790.2.1	Tomato	nucleus	25.35	16.17
Solyc07g055170.1.1	Tomato	cytosol	21.6	16.14
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	23.94	13.75
Solyc05g050950.2.1	Tomato	plastid	0.0	0.0

Protein Annotations

MapMan:13.3.6.4.3.1	Gene3D:3.40.50.300	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166
GO:GO:0000400	GO:GO:0000707	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005657	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212
GO:GO:0016043	GO:GO:0016787	GO:GO:0033063	GO:GO:0042148	InterPro:IPR020588	UniProt:K4C1C8
InterPro:P-loop_NTPase	PFAM:PF08423	PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF14	InterPro:Rad51_DMC1_RadA
InterPro:RecA_ATP-bd	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g050960.2	EnsemblPlants:Solyc05g050960.2.1	UniParc:UPI0002767420	SEG:seg

Description

No Description!

Coordinates

chr5:+:61177418..61178734

Molecular Weight (calculated)

24425.6 Da

IEP (calculated)

8.663

GRAVY (calculated)

-0.129

Length

213 amino acids

Sequence
(BLAST)

001: MDYGGLQGKA VYIDTEGSFM VERALQIAEA CLEDMREYHG FLKRDLQACQ VNMQPKDFLE NIFYFRVCSY TEQIAVVNYL EKFISEHKDV KVVIIDSITF
101: HFRQDFDDMA LRTRLLGGMA LKLMKLAKKF TLAVILLNQV TTKYTEGQYQ LTLALGDSWS HACTNRVILY WNGNERYAYI DKSPSVRSAA AAYSVTGRGI
201: RSSVSNCKRV KMM

Best Arabidopsis Sequence Match ( AT2G45280.1 )
(BLAST)

001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM

Arabidopsis Description

ATRAD51CRAS associated with diabetes protein 51C [Source:UniProtKB/TrEMBL;Acc:F4IW45]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.