Factsheet for Solyc09g082790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g050200.1.1
Solyc02g050210.1.1
Solyc04g007330.1.1
Solyc06g084410.2.1
Solyc07g017540.2.1
Solyc09g082790.2.1
Solyc12g008680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Solyc04g007330.1.1	AT1G67370.1	17937504
AT3G22880.1	Solyc09g082790.2.1	AT3G22880.1	15014444
AT3G22880.1	Solyc06g084410.2.1	AT3G29350.1	17937504
AT3G22880.1	Solyc12g008680.1.1	AT4G29170.1	17937504
AT3G22880.1	Solyc02g050200.1.1	AT5G01630.1	15014444
AT3G22880.1	Solyc02g050210.1.1	AT5G01630.1	15014444
AT3G22880.1	Solyc02g050200.1.1	AT5G01630.1	16415210
AT3G22880.1	Solyc02g050210.1.1	AT5G01630.1	16415210
AT3G22880.1	Solyc07g017540.2.1	AT5G20850.1	15014444
AT3G22880.1	Solyc07g017540.2.1	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077570	Potato	nucleus	95.51	93.55
VIT_05s0020g04170.t01	Wine grape	nucleus	93.71	89.94
CDY46610	Canola	nucleus	88.92	89.46
Bra023796.1-P	Field mustard	nucleus	88.32	88.86
KRH35438	Soybean	nucleus	89.52	86.67
OQU78622	Sorghum	nucleus	85.33	84.82
AT3G22880.1	Thale cress	nucleus	87.13	84.59
HORVU5Hr1G040730.2	Barley	nucleus	85.33	82.37
OQU84696	Sorghum	nucleus	84.73	82.27
TraesCS5A01G133000.1	Wheat	nucleus	84.73	81.79
Os11t0146800-01	Rice	nucleus	84.13	81.69
TraesCS5D01G141200.1	Wheat	nucleus	83.53	81.1
Os12t0143800-01	Rice	mitochondrion	83.23	80.81
TraesCS5B01G131900.1	Wheat	nucleus	82.93	80.52
CDY34225	Canola	mitochondrion	88.02	77.98
Bra001890.1-P	Field mustard	nucleus	19.16	76.19
CDX92963	Canola	nucleus	19.16	76.19
KRG91377	Soybean	cytosol	32.63	75.17
GSMUA_Achr8P26880_001	Banana	nucleus	86.83	75.13
Zm00001d044629_P001	Maize	nucleus	85.03	74.93
Zm00001d050876_P001	Maize	cytosol	18.56	74.7
Zm00001d035787_P001	Maize	cytosol	31.14	63.03
Zm00001d016055_P001	Maize	plastid	45.51	55.27
Solyc07g017540.2.1	Tomato	cytosol	48.2	47.08
Solyc05g050960.2.1	Tomato	cytosol	16.17	25.35
Solyc05g050950.2.1	Tomato	plastid	9.28	25.2
Solyc07g055170.1.1	Tomato	cytosol	20.96	24.56
Solyc11g072610.1.1	Tomato	cytosol, golgi, plastid	23.65	21.29

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000730	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212
GO:GO:0016043	GO:GO:0016787	GO:GO:0042148	GO:GO:0051026	GO:GO:0070192	InterPro:IPR020587
InterPro:IPR020588	UniProt:K4CVQ5	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162
PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc09g082790.2	EnsemblPlants:Solyc09g082790.2.1	TIGRFAMs:TIGR02238
UniParc:UPI000276C349	:	:	:	:	:

Description

Meiotic recombination protein DMC1 homolog [Source:Projected from Arabidopsis thaliana (AT3G22880) UniProtKB/Swiss-Prot;Acc:Q39009]

Coordinates

chr9:-:68459040..68462801

Molecular Weight (calculated)

36639.4 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.058

Length

334 amino acids

Sequence
(BLAST)

001: MLAFKPEDQL QLVEREEIDD EEDLFEAIDK LITHGINAGD VKKLQDAGIY TCNGLMMHTK KNLTGIKGLS EAKVEKICEA AEKIVNFGYI TGSDALLKRK
101: AVVRITTGSQ ALDELLGGGI ETSAITEAFG EFRSGKTQLA HTLCVSTQLP TSMKGGNGKV AYIDTEGTFR PDRVVPIAER FGMDAGAVLD NIIYARAYTY
201: EHQYNLLLGL AAKMAEEPFR LLIVDSVIAL FRVDFTGRGE LADRQQKLAQ MLSRLIKIAE EFNVAVYMTN QVIADPGGGV FISDPKKPAG GHVLAHAATI
301: RLMFRKGKGE QRVCKVFDAP NLPESEAISF FLLY

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.