Factsheet for Solyc04g007330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g082790.2.1
Solyc12g008680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67370.1	Solyc09g082790.2.1	AT3G22880.1	17937504
AT1G67370.1	Solyc12g008680.1.1	AT4G29170.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g015360.2.1	Tomato	nucleus	15.1	85.71
PGSC0003DMT400074843	Potato	cytosol	76.51	81.87
VIT_01s0010g03580.t01	Wine grape	cytosol	12.58	80.65
Solyc05g015370.2.1	Tomato	cytosol	28.36	76.47
Solyc05g015380.2.1	Tomato	cytosol	17.11	75.56
VIT_01s0010g03590.t01	Wine grape	nucleus	57.38	64.9
KRG97420	Soybean	nucleus	66.28	64.65
AT1G67370.1	Thale cress	nucleus	63.93	63.93
Bra004222.1-P	Field mustard	nucleus	61.41	61.1
CDX96096	Canola	cytosol	61.58	59.0
CDY01805	Canola	nucleus	60.74	58.96
KRH31480	Soybean	nucleus	47.65	57.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	59.73	56.42
Os09t0506800-02	Rice	nucleus	57.55	56.23
TraesCS5D01G294100.1	Wheat	nucleus	55.37	55.74
CDY28889	Canola	endoplasmic reticulum, extracellular	50.17	54.66
OQU89747	Sorghum	plastid	57.55	53.18
TraesCS5B01G285800.1	Wheat	nucleus	47.82	52.97
TraesCS5A01G286500.1	Wheat	nucleus	46.64	51.96
Zm00001d006089_P002	Maize	nucleus	36.07	45.07
OQU89777	Sorghum	nucleus	40.6	34.08
EER89142	Sorghum	mitochondrion	14.26	19.95
Os12t0606600-01	Rice	nucleus	17.79	16.8

Protein Annotations

MapMan:13.3.6.1.4	Gene3D:3.30.900.10	GO:GO:0000003	GO:GO:0000785	GO:GO:0000794	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0007129	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0051026	InterPro:HORMA_dom	InterPro:HORMA_dom_sf	InterPro:IPR003511	InterPro:IPR036570
UniProt:K4BNP0	PFAM:PF02301	PFscan:PS50815	PANTHER:PTHR45173	SUPFAM:SSF56019	EnsemblPlantsGene:Solyc04g007330.1
EnsemblPlants:Solyc04g007330.1.1	UniParc:UPI00027669AE	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:1040989..1046461

Molecular Weight (calculated)

67853.3 Da

IEP (calculated)

4.879

GRAVY (calculated)

-0.675

Length

596 amino acids

Sequence
(BLAST)

001: MVVAQKLKES EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFSDKSVP ALEMKIKKLM PMDAESRRLI DWMEKGVYDA LQKKYLKTLL FCVCEAVDGP
101: MIEEYAFSFS YSSSDSEEVS MNVNRIGMKK GGTFKCNSNT EITPNQMRSS ACKMVRTLIQ LMRTLDKMPE ERTILMKLLY HDDITPADYE PPFFRGCTDE
201: EALNPWMKNP LKLEVGNVNS KHFVLALKVK SVLDPCEDEN DGNQDDVMSL GADSVEKDDS ASDSELSDSD EDQYIVAPVD KQDVQDEDDT QDPNEDEQQF
301: SRVKDWINTY HLDRVEMTDV LSNFPDISVA LVEDISEKLV KEGILLSAGT DTYIINKQKK FDYEFDVVKE EIEGQQNQNG NGSQRGKGED YMYMKALFHA
401: LPMNYVSVAK LQRKLEGEAN QTVVKKLIDK MTQDGFVEAK SYRRLGKRVI QSDLTEEKLA EVKKVLAKDN MDVNMHESAN NFRDLSTCGA LHSIGSDLTR
501: TRGKADAYRN GSVMSDQTVS KRKEHENTPS SKAEPVASRE SFIPGKENGR INGKPNQPDE YEIVCSRSSQ DKRRRKASMV KEPIFQYATR QNSQVV

Best Arabidopsis Sequence Match ( AT1G67370.1 )
(BLAST)

001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN

Arabidopsis Description

ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.