Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P26880_001 | |
| GSMUA_Achr9P00140_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67370.1 | GSMUA_Achr8P26880_001 | AT3G22880.1 | 17937504 |
| AT1G67370.1 | GSMUA_Achr9P00140_001 | AT4G29170.1 | 17937504 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g03580.t01 | Wine grape | cytosol | 12.04 | 81.72 |
| TraesCS5D01G294100.1 | Wheat | nucleus | 58.16 | 61.99 |
| Os09t0506800-02 | Rice | nucleus | 57.84 | 59.84 |
| Solyc04g007330.1.1 | Tomato | nucleus | 56.42 | 59.73 |
| TraesCS5A01G286500.1 | Wheat | nucleus | 50.55 | 59.63 |
| TraesCS5B01G285800.1 | Wheat | nucleus | 50.55 | 59.29 |
| AT1G67370.1 | Thale cress | nucleus | 54.68 | 57.89 |
| OQU89747 | Sorghum | plastid | 58.48 | 57.21 |
| KRG97420 | Soybean | nucleus | 54.2 | 55.97 |
| Bra004222.1-P | Field mustard | nucleus | 52.3 | 55.09 |
| CDY01805 | Canola | nucleus | 52.77 | 54.23 |
| PGSC0003DMT400074843 | Potato | cytosol | 47.86 | 54.22 |
| CDX96096 | Canola | cytosol | 53.09 | 53.86 |
| VIT_01s0010g03590.t01 | Wine grape | nucleus | 44.85 | 53.7 |
| Zm00001d006089_P002 | Maize | nucleus | 37.88 | 50.1 |
| CDY28889 | Canola | endoplasmic reticulum, extracellular | 43.26 | 49.91 |
| KRH31480 | Soybean | nucleus | 38.83 | 49.7 |
| GSMUA_Achr7P22950_001 | Banana | cytosol | 7.13 | 42.45 |
| OQU89777 | Sorghum | nucleus | 39.14 | 34.79 |
| EER89142 | Sorghum | mitochondrion | 14.1 | 20.89 |
| Os12t0606600-01 | Rice | nucleus | 17.27 | 17.27 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P29060_001 | EnsemblPlants:GSMUA_Achr10T29060_001 | EnsemblPlantsGene:GSMUA_Achr10G29060_001 | Gene3D:3.30.900.10 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf |
| InterPro:IPR003511 | InterPro:IPR036570 | PANTHER:PTHR45173 | PFAM:PF02301 | PFscan:PS50815 | SEG:seg |
| SUPFAM:SSF56019 | UniParc:UPI000296788C | UniProt:M0RMD0 | MapMan:13.3.6.1.4 | : | : |
Description
retrotransposon protein, putative, SINE subclass, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G29060_001]
Coordinates
chr10:-:31687852..31693779
Molecular Weight (calculated)
70972.7 Da
IEP (calculated)
5.320
GRAVY (calculated)
-0.634
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSENFKYAF SKVTASDSRI RTGGRSVVAQ RVKEAEITEQ DSLLLTRNLL RIAIFNISYI RGLFPEKYFS DKSVPALEMK IKKLMPMDAE SRRLIDWMEK
101: GVYDALQKKY LKTLLFCICE ETEGSMIEEY AFSFSYSSLN SDEVSMKVSR NGNKKNGATF KSDVTDVTPD QMRSSACKMI RTLVSLMRTL DQMPEERTIL
201: MKLLYYDDVT PADYEPPFFR KCSENEAPND WTKTPLKLQV GNVNSRHVVL SLKVKSVLDP CEDENDGLPE DEEASLGDDS GQGNDSSSDS EVRPSLADRF
301: IVAPIGKKHP REDNCTNSDD ETQDAAHEDE QTSRVRDWIN SGHNSTIYLA DILANFPDIS LVLAEDIVER LMKEGIISKA GKDSYTVNKG INSKACTVKE
401: EAEMEGITNF EKTCNNFEED FMYMKALYYA LPMDYVSIPK LQSKLAGVAN HSTVRKLIDK MEQDGYIKNT GNRRLGKRVI HSESSNRKLL EVKQFLEQKT
501: MEIDTNCQTF EFNNSEFPPS DKIMNNGSTF GGLHSIGSDL TRTQARSKPH QSGQLLNDQA AHTNDQERGN TPTSNPAPIA SLESGVAGER PKAMTLCAGD
601: VSHSTEDKRL RKASTVEEPI LQYVKRQKSQ A
101: GVYDALQKKY LKTLLFCICE ETEGSMIEEY AFSFSYSSLN SDEVSMKVSR NGNKKNGATF KSDVTDVTPD QMRSSACKMI RTLVSLMRTL DQMPEERTIL
201: MKLLYYDDVT PADYEPPFFR KCSENEAPND WTKTPLKLQV GNVNSRHVVL SLKVKSVLDP CEDENDGLPE DEEASLGDDS GQGNDSSSDS EVRPSLADRF
301: IVAPIGKKHP REDNCTNSDD ETQDAAHEDE QTSRVRDWIN SGHNSTIYLA DILANFPDIS LVLAEDIVER LMKEGIISKA GKDSYTVNKG INSKACTVKE
401: EAEMEGITNF EKTCNNFEED FMYMKALYYA LPMDYVSIPK LQSKLAGVAN HSTVRKLIDK MEQDGYIKNT GNRRLGKRVI HSESSNRKLL EVKQFLEQKT
501: MEIDTNCQTF EFNNSEFPPS DKIMNNGSTF GGLHSIGSDL TRTQARSKPH QSGQLLNDQA AHTNDQERGN TPTSNPAPIA SLESGVAGER PKAMTLCAGD
601: VSHSTEDKRL RKASTVEEPI LQYVKRQKSQ A
001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
Arabidopsis Description
ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.