Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89143 | Sorghum | nucleus | 19.81 | 21.0 |
| Solyc05g015360.2.1 | Tomato | nucleus | 11.32 | 11.43 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 42.45 | 7.13 |
| TraesCS5D01G314800.1 | Wheat | golgi | 32.08 | 6.54 |
| TraesCS5A01G304300.1 | Wheat | cytosol, mitochondrion | 33.02 | 4.62 |
| Solyc05g015370.2.1 | Tomato | cytosol | 8.49 | 4.07 |
| AT4G32200.1 | Thale cress | nucleus | 24.53 | 1.86 |
| Solyc05g015380.2.1 | Tomato | cytosol | 1.89 | 1.48 |
| Os01t0165800-01 | Rice | cytosol | 0.94 | 0.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P22950_001 | EnsemblPlants:GSMUA_Achr7T22950_001 | EnsemblPlantsGene:GSMUA_Achr7G22950_001 | PANTHER:PTHR45173 | UniParc:UPI0002963B10 | UniProt:M0TJY1 |
| MapMan:35.1 | : | : | : | : | : |
Description
retrotransposon protein, putative, SINE subclass, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G22950_001]
Coordinates
chr7:-:25341508..25342186
Molecular Weight (calculated)
12352.3 Da
IEP (calculated)
9.519
GRAVY (calculated)
-0.268
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCICEETSG PMIDQYTLSF SYTCSKNYEV CMKISRTGNK KNVVCFRSSA GKMILMRPLD QTPEEGKRDG GYSFVLLQNK KLKWLVSMFR RTILMKLLYH
101: DDVTVR
101: DDVTVR
001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
Arabidopsis Description
ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.