Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os09t0280600-01 | |
| Os11t0146800-01 | |
| Os12t0143800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G67370.1 | Os11t0146800-01 | AT3G22880.1 | 17937504 |
| AT1G67370.1 | Os12t0143800-01 | AT3G22880.1 | 17937504 |
| AT1G67370.1 | Os09t0280600-01 | AT4G29170.1 | 17937504 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89142 | Sorghum | mitochondrion | 21.08 | 31.22 |
| Os09t0506800-02 | Rice | nucleus | 20.29 | 20.98 |
| KRH31480 | Soybean | nucleus | 15.69 | 20.08 |
| VIT_01s0010g03590.t01 | Wine grape | nucleus | 16.32 | 19.54 |
| KRG97420 | Soybean | nucleus | 18.7 | 19.31 |
| PGSC0003DMT400074843 | Potato | cytosol | 16.96 | 19.21 |
| AT1G67370.1 | Thale cress | nucleus | 17.59 | 18.62 |
| Bra004222.1-P | Field mustard | nucleus | 17.12 | 18.03 |
| Solyc04g007330.1.1 | Tomato | nucleus | 16.8 | 17.79 |
| CDY01805 | Canola | nucleus | 16.96 | 17.43 |
| CDX96096 | Canola | cytosol | 17.12 | 17.36 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 17.27 | 17.27 |
| CDY28889 | Canola | endoplasmic reticulum, extracellular | 12.36 | 14.26 |
| VIT_01s0010g03580.t01 | Wine grape | cytosol | 1.43 | 9.68 |
| Os01t0165800-01 | Rice | cytosol | 2.85 | 4.26 |
Protein Annotations
| EnsemblPlants:Os12t0606600-01 | EnsemblPlantsGene:Os12g0606600 | EntrezGene:4352745 | Gene3D:3.30.900.10 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf |
| InterPro:IPR003511 | InterPro:IPR036570 | PANTHER:PTHR11439 | PANTHER:PTHR11439:SF227 | PFAM:PF02301 | PFscan:PS50815 |
| ProteinID:ABA99843.2 | ProteinID:BAF30249.2 | ProteinID:BAT17994.1 | RefSeq:XP_015618689.1 | SEG:seg | SUPFAM:SSF56019 |
| UniParc:UPI0000D89E7A | UniProt:Q2QMF2 | MapMan:13.3.6.1.4 | : | : | : |
Description
OsSTA288DNA-binding HORMA domain containing protein. (Os12t0606600-01)
Coordinates
chr12:+:25622843..25628255
Molecular Weight (calculated)
70746.2 Da
IEP (calculated)
6.045
GRAVY (calculated)
-0.393
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAEAKDGE EVMGEAREGD PVDKIRRLLR IAIYNIGYVE GFFPDAYFSD IVVREDDMVI KQLVPIVDSE SRRLMNLIDE AEACLCDALK KKYLKTLVFS
101: ICEKYEGPVL QEFIFSFSYP STGPDEVVMM MTRTGSKVIT KFEASAVKVT PNQMRSSACK MIRLIVQQTR TYPVQEEHAI EMKLSFYEDT TPEDYEPPFP
201: KYCVNSEDVA IWNNNILKME VGNINNKHVV LTLKVKSAQS YCKNSIVDDC SDYEMCECET YGYTSAPNDD TEEDYHTGML ASPIKAWYPQ DTGTQMTRKR
301: KTGFVLVSSS KKIKFLLDSG ASHHICNDKA IMRNLKDVKK EYQVSLASCG GLELKAEMMG TVVTKDMKLS QVGYIPEMEF NVVSIGQLAV QGLITTGGDG
401: RFSVIDAKEA RVVGEGHLQR KTEKVDGRVY HEYVFKSLIR EIEGDDEKLI EPLRADDDEI DEEEEKKCWV IDTGCGRHMI PDISILTQVK REEVTFQAAC
501: GIVSSTHKGL VKEGNLILRD VLCCPKVTRK MISGPMLDLS GHRFTFNDKK CCIVHKDGLE LRGVGKLDRA TRTYLLKPGE DSRAAAAAKE EPKMLAAAAE
601: GYGGPKQEAD TKNMRGKGKK TAQATKRLRL S
101: ICEKYEGPVL QEFIFSFSYP STGPDEVVMM MTRTGSKVIT KFEASAVKVT PNQMRSSACK MIRLIVQQTR TYPVQEEHAI EMKLSFYEDT TPEDYEPPFP
201: KYCVNSEDVA IWNNNILKME VGNINNKHVV LTLKVKSAQS YCKNSIVDDC SDYEMCECET YGYTSAPNDD TEEDYHTGML ASPIKAWYPQ DTGTQMTRKR
301: KTGFVLVSSS KKIKFLLDSG ASHHICNDKA IMRNLKDVKK EYQVSLASCG GLELKAEMMG TVVTKDMKLS QVGYIPEMEF NVVSIGQLAV QGLITTGGDG
401: RFSVIDAKEA RVVGEGHLQR KTEKVDGRVY HEYVFKSLIR EIEGDDEKLI EPLRADDDEI DEEEEKKCWV IDTGCGRHMI PDISILTQVK REEVTFQAAC
501: GIVSSTHKGL VKEGNLILRD VLCCPKVTRK MISGPMLDLS GHRFTFNDKK CCIVHKDGLE LRGVGKLDRA TRTYLLKPGE DSRAAAAAKE EPKMLAAAAE
601: GYGGPKQEAD TKNMRGKGKK TAQATKRLRL S
001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN
Arabidopsis Description
ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.