Factsheet for PGSC0003DMT400074843

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000930
PGSC0003DMT400077570

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67370.1	PGSC0003DMT400077570	AT3G22880.1	17937504
AT1G67370.1	PGSC0003DMT400000930	AT4G29170.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007330.1.1	Tomato	nucleus	81.87	76.51
VIT_01s0010g03590.t01	Wine grape	nucleus	61.76	65.28
KRH31480	Soybean	nucleus	50.45	57.0
AT1G67370.1	Thale cress	nucleus	59.78	55.87
KRG97420	Soybean	nucleus	60.86	55.48
TraesCS5B01G285800.1	Wheat	nucleus	52.78	54.65
TraesCS5A01G286500.1	Wheat	nucleus	51.71	53.83
Bra004222.1-P	Field mustard	nucleus	57.45	53.42
CDY01805	Canola	nucleus	56.73	51.47
CDX96096	Canola	cytosol	57.27	51.29
Os09t0506800-02	Rice	nucleus	53.86	49.18
TraesCS5D01G294100.1	Wheat	nucleus	52.24	49.16
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	54.22	47.86
CDY28889	Canola	endoplasmic reticulum, extracellular	46.32	47.17
OQU89747	Sorghum	plastid	52.96	45.74
Zm00001d006089_P002	Maize	nucleus	38.78	45.28
OQU89777	Sorghum	nucleus	37.34	29.3
VIT_01s0010g03580.t01	Wine grape	cytosol	4.49	26.88
EER89142	Sorghum	mitochondrion	15.26	19.95
Os12t0606600-01	Rice	nucleus	19.21	16.96

Protein Annotations

MapMan:13.3.6.1.4	Gene3D:3.30.900.10	GO:GO:0000003	GO:GO:0000785	GO:GO:0000794	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005694	GO:GO:0006139
GO:GO:0006259	GO:GO:0007049	GO:GO:0007129	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0051026	InterPro:HORMA_dom	InterPro:HORMA_dom_sf	InterPro:IPR003511	InterPro:IPR036570
UniProt:M1CU93	PFAM:PF02301	EnsemblPlantsGene:PGSC0003DMG400029108	PGSC:PGSC0003DMG400029108	EnsemblPlants:PGSC0003DMT400074843	PFscan:PS50815
PANTHER:PTHR45173	SUPFAM:SSF56019	UniParc:UPI0002955548	SEG:seg	:	:

Description

Meiotic asynaptic mutant 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029108]

Coordinates

chr5:+:13670075..13674738

Molecular Weight (calculated)

63277.7 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.674

Length

557 amino acids

Sequence
(BLAST)

001: MKIKKLMPMD AESRRLIDWM EKGVYDALQN KYLKTLLFCV CEAIDGPMIE EYAFSFSYSS SDSEEVSMNV NRVGMKKGGT FKSNSTTEIT PNQMRSSACK
101: MVRTLIQLMR TLDKMPEERT ILMKLLYHDD VTPADYEPPF FRGCTDEEAL NPWTKNPLKL EVGNVNSKHL VLALKVKSVL DPCEDGNDDD QDDVMSLGAD
201: SAERDNSASD TEFSDSDEDQ YIVAPVEKKN VQDKGDMVDE DDTQDPAEDE QQFVWVKDWI STYHLDRVEV TDVLSNFPNI SVVLIEDILE KLVKEGILSS
301: AGTDTYIIKR QKKFDYEFDV VKEEPEGQQN KNGNQSQQGK VEDYMYMKAL FHALPMNYVS VAKLQSKLEG EANQTAVKRL IDKMTQDGYI EAKGYRRLGK
401: RVIHCDLTEE KLAEVTKVLA KDITSTLIIN QTTKSNITVW LLENNFRDLS TCGAVHSIGS DLTRTRGKCD AYGNRSVMSD QTVSKRKEHE KTPSSNAEPV
501: ASRESFVPGK ENGRPNQAED EYEIVCSRSS QDKRQRKASM VKEPILQYVR RQKSQVA

Best Arabidopsis Sequence Match ( AT1G67370.1 )
(BLAST)

001: MVMAQKLKEA EITEQDSLLL TRNLLRIAIF NISYIRGLFP EKYFNDKSVP ALDMKIKKLM PMDAESRRLI DWMEKGVYDA LQRKYLKTLM FSICETVDGP
101: MIEEYSFSFS YSDSDSQDVM MNINRTGNKK NGGIFNSTAD ITPNQMRSSA CKMVRTLVQL MRTLDKMPDE RTIVMKLLYY DDVTPPDYEP PFFRGCTEDE
201: AQYVWTKNPL RMEIGNVNSK HLVLTLKVKS VLDPCEDEND DMQDDGKSIG PDSVHDDQPS DSDSEISQTQ ENQFIVAPVE KQDDDDGEVD EDDNTQDPAE
301: NEQQLARVKD WINSRHLDTL ELTDILANFP DISIVLSEEI MDQLVTEGVL SKTGKDMYIK KRDKTPESEF TFVKEEADGQ ISPGKSVAPE DYLYMKALYH
401: SLPMKYVTIT KLHNMLDGEA NQTAVRKLMD RMTQEGYVEA SSNRRLGKRV IHSSLTEKKL NEVRKVLATD DMDVDVTETI NKTNGPDAKV TADVSTCGGI
501: HSIGSDFTRT KGRSGGMQQN GSVLSEQTIS KAGNTPISNK AQPAASRESF AVHGGAVKEA ETVNCSQASQ DRRGRKTSMV REPILQYSKR QKSQAN

Arabidopsis Description

ASY1Meiosis-specific protein ASY1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRV8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.