Factsheet for PGSC0003DMT400077570

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000930
PGSC0003DMT400051833
PGSC0003DMT400074843
PGSC0003DMT400077570

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	PGSC0003DMT400074843	AT1G67370.1	17937504
AT3G22880.1	PGSC0003DMT400077570	AT3G22880.1	15014444
AT3G22880.1	PGSC0003DMT400051833	AT3G29350.1	17937504
AT3G22880.1	PGSC0003DMT400000930	AT4G29170.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082790.2.1	Tomato	nucleus	93.55	95.51
VIT_05s0020g04170.t01	Wine grape	nucleus	88.56	86.78
CDY46610	Canola	nucleus	83.87	86.14
Bra023796.1-P	Field mustard	nucleus	83.28	85.54
KRH35438	Soybean	nucleus	85.04	84.06
AT3G22880.1	Thale cress	nucleus	82.99	82.27
OQU78622	Sorghum	nucleus	80.35	81.55
OQU84696	Sorghum	nucleus	80.65	79.94
Os11t0146800-01	Rice	nucleus	80.06	79.36
HORVU5Hr1G040730.2	Barley	nucleus	80.35	79.19
TraesCS5D01G141200.1	Wheat	nucleus	79.47	78.78
TraesCS5A01G133000.1	Wheat	nucleus	79.77	78.61
Os12t0143800-01	Rice	mitochondrion	79.18	78.49
TraesCS5B01G131900.1	Wheat	nucleus	78.89	78.2
CDY34225	Canola	mitochondrion	82.99	75.07
Bra001890.1-P	Field mustard	nucleus	18.48	75.0
CDX92963	Canola	nucleus	18.48	75.0
Zm00001d050876_P001	Maize	cytosol	18.18	74.7
GSMUA_Achr8P26880_001	Banana	nucleus	82.7	73.06
Zm00001d044629_P001	Maize	nucleus	80.06	72.03
KRG91377	Soybean	cytosol	29.03	68.28
Zm00001d035787_P001	Maize	cytosol	27.57	56.97
Zm00001d016055_P001	Maize	plastid	44.28	54.91
PGSC0003DMT400018063	Potato	nucleus	26.1	24.38
PGSC0003DMT400052651	Potato	nucleus	19.65	23.34
PGSC0003DMT400065320	Potato	cytosol, extracellular, plastid	3.52	17.39
PGSC0003DMT400065314	Potato	cytosol	11.14	17.35

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0051026	InterPro:IPR020587	InterPro:IPR020588	UniProt:M1CYK4
InterPro:P-loop_NTPase	PFAM:PF08423	EnsemblPlantsGene:PGSC0003DMG400030167	PGSC:PGSC0003DMG400030167	EnsemblPlants:PGSC0003DMT400077570	PIRSF:PIRSF005856
PFscan:PS50162	PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd
InterPro:RecA_monomer-monomer_interface	SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI000296121A

Description

DMC1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030167]

Coordinates

chr9:-:54531319..54535135

Molecular Weight (calculated)

37388.4 Da

IEP (calculated)

6.271

GRAVY (calculated)

-0.079

Length

341 amino acids

Sequence
(BLAST)

001: MLAFKPEDQL QLVEREEIDD EEDLFEAIDK LITHGINAGD VKKLQDAGIY TCNGLMMHTK KNLTGIKGLS EAKVEKICEA AEKIVNFGYI TGSEALLKRK
101: AVVRITTGSQ ALDELLGGGI ETSAITEAFG EFRSGKTQLA HTLCVSTQLP TSMKGGNGKV AYIDTEGTFR PDRVVPIAER FGMDAGAVLD NIIYARAYTY
201: EHQYNLLLGL AAKMAEEPFR LLIVDSVIAL FRVDFTGRGE LADRQQKLAQ MLSRLIKIAE EFNVAVYMTN QVIADPGGGV FISDPKKPAG GHVLAHAATI
301: RLMFRKGKGE QRVCKRQEET LPYISVIAAS LLSTESRLVQ C

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.