Factsheet for Zm00001d050876_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005140_P003
Zm00001d006089_P002
Zm00001d016055_P001
Zm00001d021898_P001
Zm00001d024953_P024
Zm00001d035787_P001
Zm00001d041757_P001
Zm00001d044629_P001
Zm00001d050876_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	Zm00001d006089_P002	AT1G67370.1	17937504
AT3G22880.1	Zm00001d016055_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d035787_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d044629_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d050876_P001	AT3G22880.1	15014444
AT3G22880.1	Zm00001d005140_P003	AT4G29170.1	17937504
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	15014444
AT3G22880.1	Zm00001d024953_P024	AT5G01630.1	16415210
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	15014444
AT3G22880.1	Zm00001d021898_P001	AT5G20850.1	16415210
AT3G22880.1	Zm00001d041757_P001	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035787_P001	Maize	cytosol	79.52	40.0
Zm00001d006656_P001	Maize	cytosol	42.17	28.93
OQU78622	Sorghum	nucleus	81.93	20.24
TraesCS5D01G141200.1	Wheat	nucleus	81.93	19.77
TraesCS5B01G131900.1	Wheat	nucleus	81.93	19.77
Os12t0143800-01	Rice	mitochondrion	81.93	19.77
Os11t0146800-01	Rice	nucleus	81.93	19.77
TraesCS5A01G133000.1	Wheat	nucleus	81.93	19.65
HORVU5Hr1G040730.2	Barley	nucleus	81.93	19.65
Solyc09g082790.2.1	Tomato	nucleus	74.7	18.56
Zm00001d044629_P001	Maize	nucleus	84.34	18.47
PGSC0003DMT400077570	Potato	nucleus	74.7	18.18
VIT_05s0020g04170.t01	Wine grape	nucleus	74.7	17.82
Bra023796.1-P	Field mustard	nucleus	71.08	17.77
CDY46610	Canola	nucleus	71.08	17.77
KRH35438	Soybean	nucleus	73.49	17.68
AT3G22880.1	Thale cress	nucleus	72.29	17.44
GSMUA_Achr8P26880_001	Banana	nucleus	78.31	16.84
CDY34225	Canola	mitochondrion	71.08	15.65
Zm00001d041757_P001	Maize	cytosol	46.99	11.47
Zm00001d021898_P001	Maize	cytosol	45.78	11.18
KRG91377	Soybean	cytosol	15.66	8.97
Zm00001d044278_P001	Maize	cytosol	28.92	8.16
Zm00001d010986_P001	Maize	vacuole	30.12	6.98
Zm00001d016839_P001	Maize	plastid	24.1	6.87
Zm00001d016055_P001	Maize	plastid	12.05	3.64
CDX92963	Canola	nucleus	1.2	1.19
Bra001890.1-P	Field mustard	nucleus	1.2	1.19

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6Q3Q1	ProteinID:AQK53189.1	InterPro:DNA_recomb/repair_Rad51_C	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423
PFscan:PS50162	PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI000844384B
EnsemblPlantsGene:Zm00001d050876	EnsemblPlants:Zm00001d050876_P001	EnsemblPlants:Zm00001d050876_T001	SEG:seg	:	:

Description

Meiotic recombination protein DMC1 homolog

Coordinates

chr4:+:128063990..128064647

Molecular Weight (calculated)

9308.4 Da

IEP (calculated)

4.414

GRAVY (calculated)

0.277

Length

83 amino acids

Sequence
(BLAST)

1: MAEEPFKLLI VDSVIALFRV DFSGRGELEE REQKLAHMLS RLTKIAEEFN VEVYITNQVI ADPGGGMFIT DLGGGIFLFI FGR

Best Arabidopsis Sequence Match ( AT3G22880.2 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA ISF

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.