Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g072610.1.1 | Tomato | cytosol, golgi, plastid | 94.2 | 17.52 |
| VIT_06s0004g03600.t01 | Wine grape | cytosol, nucleus, plastid | 78.26 | 14.56 |
| KRH10360 | Soybean | mitochondrion, nucleus, plastid | 69.57 | 12.7 |
| AT2G28560.1 | Thale cress | cytosol, nucleus, plastid | 63.77 | 11.86 |
| Os05t0121700-02 | Rice | cytosol, mitochondrion, nucleus, plastid | 62.32 | 11.85 |
| TraesCS1A01G058500.1 | Wheat | cytosol, nucleus, plastid | 59.42 | 11.2 |
| Zm00001d010986_P001 | Maize | vacuole | 57.97 | 11.17 |
| GSMUA_Achr8P21040_001 | Banana | nucleus | 60.87 | 11.17 |
| HORVU1Hr1G011840.1 | Barley | cytosol, nucleus, plastid | 59.42 | 11.11 |
| TraesCS1B01G075900.1 | Wheat | cytosol, peroxisome, plastid | 59.42 | 11.11 |
| TraesCS1D01G059600.2 | Wheat | cytosol, peroxisome, plastid | 57.97 | 10.78 |
| EES18935 | Sorghum | cytosol, peroxisome, plastid | 56.52 | 10.71 |
| CDX77188 | Canola | cytosol | 60.87 | 9.15 |
| CDY53383 | Canola | cytosol | 60.87 | 9.15 |
| Bra035691.1-P | Field mustard | cytosol | 59.42 | 8.84 |
| PGSC0003DMT400077570 | Potato | nucleus | 17.39 | 3.52 |
| PGSC0003DMT400018063 | Potato | nucleus | 11.59 | 2.19 |
| PGSC0003DMT400052651 | Potato | nucleus | 5.8 | 1.39 |
| PGSC0003DMT400065314 | Potato | cytosol | 1.45 | 0.46 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065320 | EnsemblPlantsGene:PGSC0003DMG402025391 | PGSC:PGSC0003DMG402025391 | UniParc:UPI000294E211 | UniProt:M1CDS1 | MapMan:35.1 |
Description
DNA repair protein RAD51 homolog 2 [Source:PGSC_GENE;Acc:PGSC0003DMG402025391]
Coordinates
chr11:-:44485243..44487118
Molecular Weight (calculated)
7537.2 Da
IEP (calculated)
4.289
GRAVY (calculated)
0.545
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MANKLLSEMG LPNSIANIFA ARNLITAKDV FSLTEFELME LLDVDLAVVT SAVAHISEIT CPPYQTVRV
001: MANKLIGEMG LHTKISNIFA ARNIITAKDA LSMTEFELME LLDVGMKEIR SAISFISEAT SPPCQSARSL LEKKVENEHL SGHLPTHLKG LDDTLCGGIP
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F
101: FGVLTELVGP PGIGKSQFCM KLALSASFPV AYGGLDGRVI YIDVESKFSS RRVIEMGLES FPEVFHLKGM AQEMAGRILV LRPTSLANFT ESIQELKNSI
201: LQNQVKLLVI DSMTALLSGE NKPGAQRQPQ LGWHISFLKS LAEFSRIPIV VTNQVRSQNR DETSQYSFQA KVKDEFKDNT KTYDSHLVAA LGINWAHAVT
301: IRLVLEAKSG QRIIKVAKSP MSPPLAFPFH ITSAGISLLS DNGTELKGPG INTIHARGIV DPDYVALFRT F
Arabidopsis Description
ATRAD51BDNA repair (Rad51) family protein [Source:TAIR;Acc:AT2G28560]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.