CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89142
EER98621
EER99597
OQU78622
OQU79150
OQU83843
OQU84696
OQU89747
OQU89777

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22880.1	EER89142	AT1G67370.1	17937504
AT3G22880.1	OQU89747	AT1G67370.1	17937504
AT3G22880.1	OQU89777	AT1G67370.1	17937504
AT3G22880.1	OQU78622	AT3G22880.1	15014444
AT3G22880.1	OQU84696	AT3G22880.1	15014444
AT3G22880.1	EER98621	AT4G29170.1	17937504
AT3G22880.1	EER99597	AT5G20850.1	15014444
AT3G22880.1	OQU79150	AT5G20850.1	15014444
AT3G22880.1	OQU83843	AT5G20850.1	15014444
AT3G22880.1	EER99597	AT5G20850.1	16415210
AT3G22880.1	OQU79150	AT5G20850.1	16415210
AT3G22880.1	OQU83843	AT5G20850.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78622	Sorghum	nucleus	94.48	96.73
Os11t0146800-01	Rice	nucleus	96.51	96.51
TraesCS5D01G141200.1	Wheat	nucleus	95.06	95.06
Os12t0143800-01	Rice	mitochondrion	95.06	95.06
TraesCS5B01G131900.1	Wheat	nucleus	94.48	94.48
HORVU5Hr1G040730.2	Barley	nucleus	92.73	92.2
TraesCS5A01G133000.1	Wheat	nucleus	92.44	91.91
VIT_05s0020g04170.t01	Wine grape	nucleus	86.05	85.06
Solyc09g082790.2.1	Tomato	nucleus	82.27	84.73
KRH35438	Soybean	nucleus	84.88	84.64
Bra023796.1-P	Field mustard	nucleus	79.07	81.93
CDY46610	Canola	nucleus	79.07	81.93
AT3G22880.1	Thale cress	nucleus	81.69	81.69
PGSC0003DMT400077570	Potato	nucleus	79.94	80.65
GSMUA_Achr8P26880_001	Banana	nucleus	87.21	77.72
Bra001890.1-P	Field mustard	nucleus	18.31	75.0
CDX92963	Canola	nucleus	18.31	75.0
KRG91377	Soybean	cytosol	31.4	74.48
CDY34225	Canola	mitochondrion	78.78	71.88
Zm00001d016055_P001	Maize	plastid	48.84	61.09
EER99597	Sorghum	cytosol	50.58	50.58
OQU79150	Sorghum	cytosol	51.16	50.0
OQU83843	Sorghum	cytosol	50.58	49.86
KXG31586	Sorghum	cytosol	25.87	31.56
EES18935	Sorghum	cytosol, peroxisome, plastid	25.0	23.63
OQU85146	Sorghum	plastid	19.19	20.75

Protein Annotations

Gene3D:1.10.150.20	MapMan:13.3.6.4.1	Gene3D:3.40.50.300	UniProt:A0A1Z5RMU4	InterPro:DMC1_rcmbase	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR020587	InterPro:IPR020588	EnsemblPlants:OQU84696	ProteinID:OQU84696
ProteinID:OQU84696.1	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF30	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	EnsemblPlantsGene:SORBI_3004G107000
SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02238	UniParc:UPI000B4250A8	:	:

Description

hypothetical protein

Coordinates

chr4:-:10209171..10213583

Molecular Weight (calculated)

37546.5 Da

IEP (calculated)

5.895

GRAVY (calculated)

-0.139

Length

344 amino acids

Sequence
(BLAST)

001: MAPSRHADEG GQLQLMDADR VDDEEECFES IDKLISQGIN AGDVKKLQDA GIYTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKLLNQ GFMTGTDLLL
101: KRKSVVRITT GSQALDELLG GGIETLCITE AFGEFRSGKT QLAHTLCVST QLPIHMHGGN GKVAYIDTEG TFRPERIVPI AERFGMDANA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMAEE PFRLLIVDSV IALFRVDFSG RGELAERQQK LAQMLSRLTK IAEEFNVAVY ITNQVIADPG GGMFITDPKK PAGGHVLAHA
301: ATIRLMLRKG KGEQRVCKIF DAPNLPEGEA VFQVTSGGIM DAKD

Best Arabidopsis Sequence Match ( AT3G22880.1 )
(BLAST)

001: MMASLKAEET SQMQLVEREE NDEDEDLFEM IDKLIAQGIN AGDVKKLQEA GIHTCNGLMM HTKKNLTGIK GLSEAKVDKI CEAAEKIVNF GYMTGSDALI
101: KRKSVVKITT GCQALDDLLG GGIETSAITE AFGEFRSGKT QLAHTLCVTT QLPTNMKGGN GKVAYIDTEG TFRPDRIVPI AERFGMDPGA VLDNIIYARA
201: YTYEHQYNLL LGLAAKMSEE PFRILIVDSI IALFRVDFTG RGELADRQQK LAQMLSRLIK IAEEFNVAVY MTNQVIADPG GGMFISDPKK PAGGHVLAHA
301: ATIRLLFRKG KGDTRVCKVY DAPNLAEAEA SFQITQGGIA DAKD

Arabidopsis Description

DMC1Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.