Factsheet for Solyc02g050210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114170.2.1
Solyc07g017540.2.1
Solyc09g082790.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01630.1	Solyc09g082790.2.1	AT3G22880.1	15014444
AT5G01630.1	Solyc09g082790.2.1	AT3G22880.1	16415210
AT5G01630.1	Solyc07g017540.2.1	AT5G20850.1	15014444
AT5G01630.1	Solyc07g017540.2.1	AT5G20850.1	16415210
AT5G01630.1	Solyc03g114170.2.1	AT5G45010.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0164800-01	Rice	cytosol, mitochondrion	32.11	45.06
VIT_08s0058g00500.t01	Wine grape	cytosol	60.28	39.12
CDY08306	Canola	nucleus	38.59	23.87
KRH17731	Soybean	mitochondrion	52.68	17.61
GSMUA_Achr5P28060_001	Banana	nucleus	43.66	16.87
Bra005674.1-P	Field mustard	nucleus	47.32	15.85
CDY64035	Canola	nucleus	46.48	15.6
CDX80759	Canola	nucleus	47.89	15.36
AT5G01630.1	Thale cress	nucleus	49.58	15.24
CDY11187	Canola	nucleus	49.01	15.01
AT4G00020.2	Thale cress	nucleus	48.73	14.57
Bra037060.1-P	Field mustard	nucleus	44.79	13.73
Zm00001d024953_P024	Maize	nucleus	42.54	9.79
TraesCS3A01G099300.4	Wheat	nucleus	43.38	9.73
TraesCS3D01G099600.1	Wheat	nucleus	44.23	9.64
TraesCS3B01G115500.3	Wheat	nucleus	43.66	9.53
HORVU3Hr1G017990.10	Barley	nucleus, plastid	43.94	9.33
Os01t0164900-01	Rice	cytosol, mitochondrion	9.58	7.07
Solyc02g050200.1.1	Tomato	nucleus	1.69	0.76
TraesCS3B01G104500.1	Wheat	nucleus	0.28	0.12
TraesCS3D01G089500.2	Wheat	nucleus	0.28	0.12
TraesCS3A01G089200.3	Wheat	nucleus	0.28	0.11
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	0.28	0.11

Protein Annotations

MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	InterPro:BRCA2	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003697	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:K4B610
InterPro:NA-bd_OB-fold	PANTHER:PTHR11289	SUPFAM:SSF50249	SUPFAM:SSF81878	EnsemblPlantsGene:Solyc02g050210.1	EnsemblPlants:Solyc02g050210.1.1
UniParc:UPI0002767AF3	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4351112..4353010

Molecular Weight (calculated)

39656.2 Da

IEP (calculated)

6.004

GRAVY (calculated)

-0.228

Length

355 amino acids

Sequence
(BLAST)

001: MNIWIYTDKT YICELCQCRR SSIVEGVVSE SQREKRDAYI GSDYESKEGA RILRILERAA EPEVLMAEMT SEQLNLFSSY QAKLEAFRQS DMQKSLEKAL
101: QTAGLAERDV TPFMRVRVVG LTSKRTSLKC CPKEGLITIW NPTEKQHCGL AEGQAFSVTG LTPISSDSST LYLQTKGSTS KWLPLSPRAV EHFESSFCPR
201: QSISLSKLGE VPISREFDIA AVVVFVGQLY AEAHQTKQWV FVADGSKAML DSDDELETLM AISFTSPHIG TDSFAPINSN LVESTVCFCN VIKRARDIVN
301: NLWVAEATEN STYYLNYDHS DCSHLKDAGA SAERWAKISG LRLEKLRGRV LSIIS

Best Arabidopsis Sequence Match ( AT5G01630.1 )
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Arabidopsis Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.