Factsheet for Solyc03g114170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g111700.1.1
Solyc02g050200.1.1
Solyc02g050210.1.1
Solyc07g039210.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45010.1	Solyc01g111700.1.1	AT1G20200.1	19843313
AT5G45010.1	Solyc01g111700.1.1	AT1G75990.1	19843313
AT5G45010.1	Solyc07g039210.2.1	AT2G19560.1	19843313
AT5G45010.1	Solyc02g050200.1.1	AT5G01630.1	16415210
AT5G45010.1	Solyc02g050210.1.1	AT5G01630.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062932	Potato	cytosol, mitochondrion, nucleus	100.0	81.08
KRH54417	Soybean	cytosol	83.33	68.49
KRH63506	Soybean	cytosol	83.33	68.49
VIT_14s0066g01530.t01	Wine grape	nucleus	81.67	67.12
Bra004106.1-P	Field mustard	nucleus	78.33	66.2
CDY39298	Canola	nucleus	78.33	66.2
KRH16129	Soybean	cytosol	80.0	65.75
CDY07438	Canola	nucleus	78.33	65.28
VIT_17s0000g08090.t01	Wine grape	cytosol, mitochondrion, nucleus	68.33	59.42
AT5G45010.1	Thale cress	cytosol	70.0	57.53
KRH04963	Soybean	vacuole	78.33	39.5

Protein Annotations

EnsemblPlants:Solyc03g114170.2.1	EnsemblPlantsGene:Solyc03g114170.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006406
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009987	GO:GO:0016043
GO:GO:0043248	InterPro:DSS1_SEM1	PANTHER:PTHR16771	PANTHER:PTHR16771:SF5	PFAM:PF05160	SEG:seg
SMART:SM01385	UniParc:UPI00027681C0	UniProt:K4BKR9	MapMan:16.11.2.4	:	:

Description

No Description!

Coordinates

chr3:+:64182351..64186112

Molecular Weight (calculated)

7418.1 Da

IEP (calculated)

3.596

GRAVY (calculated)

-1.628

Length

60 amino acids

Sequence
(BLAST)

1: MDLFEDDDEF EEFAIDQEWE DKEKGKEVTQ QWEDDWDDDD VNDDFSLQLR KELEINTEKK

Best Arabidopsis Sequence Match ( AT1G64750.1 )
(BLAST)

1: MAAEPKAATA EVVKMDLFED DDEFEEFEIN EDWLEKEEVK EVSQQWEDDW DDDDVNDDFS RQLRKELENG TDKK

Arabidopsis Description

ATDSS1(I)Deletion of SUV3 suppressor 1(I) [Source:UniProtKB/TrEMBL;Acc:F4I886]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.