Factsheet for Solyc01g111700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g114170.2.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20200.1	Solyc03g114170.2.1	AT5G45010.1	19843313
AT1G75990.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT1G75990.1	Solyc03g114170.2.1	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	94.42	94.03
CDY31902	Canola	cytosol	11.57	77.78
Solyc01g111710.2.1	Tomato	nucleus	66.94	66.53
KRH61001	Soybean	nucleus	65.5	65.09
VIT_18s0001g01120.t01	Wine grape	nucleus	65.29	64.89
KRH51666	Soybean	nucleus	65.29	64.89
CDX83743	Canola	cytosol	5.17	64.1
KRH17475	Soybean	nucleus	64.26	63.47
AT1G20200.1	Thale cress	cytosol	63.84	63.32
KRH05990	Soybean	cytosol, nucleus, plastid	63.64	62.86
CDX87648	Canola	extracellular	62.4	62.66
Bra015799.1-P	Field mustard	plastid	62.19	62.45
CDY54330	Canola	cytosol, nucleus, plastid	45.45	62.32
CDX73215	Canola	cytosol, nucleus, plastid	62.81	61.91
AT1G75990.1	Thale cress	cytosol	61.57	61.19
CDY00383	Canola	extracellular	13.22	55.65
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	16.32	51.63
CDX78831	Canola	extracellular	10.74	50.0
CDY31901	Canola	cytosol	24.59	47.41
CDX83742	Canola	cytosol	4.75	40.35
CDY22923	Canola	extracellular	17.77	39.27
CDY54331	Canola	cytosol	5.99	34.12
CDY47438	Canola	plastid	16.94	28.37

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030234
GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717	UniProt:K4B432	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	EnsemblPlantsGene:Solyc01g111700.1	EnsemblPlants:Solyc01g111700.1.1	TMHMM:TMhelix	UniParc:UPI00027678E1	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:97886360..97889236

Molecular Weight (calculated)

55060.7 Da

IEP (calculated)

9.021

GRAVY (calculated)

-0.057

Length

484 amino acids

Sequence
(BLAST)

001: MAFLIVIVSV FYIAMVVVWV SQVLFKMDDQ EVKVQHQSPP SVYDCSVDPS VLQDLKEVAS LIEGGAYTSE VQKIYRAMRL TMKLRSKLKA SVLSAFLNYV
101: LISGSEFHKR LSSYLPRDRH DSQCDVGTPA TESKHLLPEL EMFCYLLVLI FLIDQKKYNE AKACSSESIV LLKSKNSITA DVLASRLYFY YSLSFELAGD
201: LAEIRGNLLA LYRSATIHHN KFSQETLLNL LLRNYLHYNL YDQAEKIRSK AHRFEALSNQ QFCRYLFYQG KIKTIQLEYT DAKDCLLQAA QKGPTTAVGF
301: KIQCNKWAVI VHLLLGEIPE RTIFTQKRME KALRPYFVLT NAFRVGDLEL FRTVAEKFSS TFSQDKTSNL INRVRHNVIR TGIKNVSVSY TRISLADIAK
401: KLNLDLENPI GDAENIVAKA IRDGAIDATL DHANGWLVSK ATEDVYSTNE PQIAFDSRIN FCLSMHNEAL RALRFPQGLI NKVV

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.